Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq48068 136 7e-27 seq48925 105 1e-17 seq61578 96.9 6e-15 >seq48068 Length=254185 Score = 136 bits (150), Expect = 7e-27 Identities = 144/188 (77%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 39417 GAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCT 39476 || ||||| ||||| |||||| ||||||||| ||||||||| |||||| ||||||| Sbjct 224848 GAGTACATCTCAGAGTGTACATTTTCCATAGCGATTTGAAATCCATAAAAGAACCTTGCT 224789 Query 39477 TCT--GAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCAT 39534 || || | |||||||| | ||||| || |||||||||||| ||| ||||||| Sbjct 224788 TCACCGATT--TGAACTTCTTGTGAAAATCGCTCTACTAAATTCTCATTTACTATACCAT 224731 Query 39535 CAGATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAAT 39594 |||| || || || ||||| || |||| ||||||||| || | ||| || |||||| Sbjct 224730 CAGAAGCAGCAAAAAATGCCAACACATGTTTAATAAAGTGCCTCTCACAGTCCTTTAAAC 224671 Query 39595 TTTCCCAA 39602 |||||||| Sbjct 224670 TTTCCCAA 224663 Score = 104 bits (114), Expect = 4e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 39150 TCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTA 39209 || |||||||| |||| ||||| || || || | || |||||||| || | ||| || Sbjct 225412 TCATCCCTAGAAATAAGCTCATTGCTGAAGGTCAGACCAGGCATTAAGCCGCGCTTCTTC 225353 Query 39210 AGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCT 39269 | ||| || ||||||||||| |||| ||||||||| || || |||||| ||||| || Sbjct 225352 AACCAGAAAATTGATGCAAAGCTACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGGCA 225293 Query 39270 ATTATTCTTGCTCCAAA 39286 | ||||||| | ||||| Sbjct 225292 ACTATTCTTTCCCCAAA 225276 >seq48925 Length=1097090 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || || || || || | ||| | || || || ||||| || || || || ||||| Sbjct 515358 ATGTTGTAGTCGGACAACGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAATCTT 515299 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || || ||||| || || ||||| ||||| ||||| ||||||||| ||||| Sbjct 515298 TGCTGATCTGGTGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTG 515239 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || | ||| || |||| || ||||||||||| || | ||||| | ||| |||||| Sbjct 515238 TCAGAGGCTTCAACCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGC 515179 Query 172068 ATT 172070 ||| Sbjct 515178 ATT 515176 >seq61578 Length=3623949 Score = 96.9 bits (106), Expect = 6e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||| || || | ||||||||| | || | |||||| ||| || || || Sbjct 3474213 ATACCACCTCGGAGGCGGAGTACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCA 3474154 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | ||| | || |||| |||| || || || || |||||||| ||| | || Sbjct 3474153 GACAATGTGCGTCCATCTTCCAGCTGTTCGCCGGCGAAGATCAATCTCTGCTGGGCTGGG 3474094 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| || || || ||||| || || || || | || Sbjct 3474093 GGGATGCCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCCGAAGGCTCC 3474034 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || |||| || ||||| || || || || || || | ||| ||||||||||| Sbjct 3474033 ACCTCTAAGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAAATCTGCATTTT 3473981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904421089644600