Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq48925 178 4e-39 seq53576 100 8e-16 seq23474 100 8e-16 >seq48925 Length=1097090 Score = 178 bits (196), Expect = 4e-39 Identities = 639/984 (65%), Gaps = 19/984 (2%) Strand=Plus/Plus Query 155474 TGGGTAAAAATTCACATCAATAATGTTATTTAAATT-TGTAACCAATACCTTGGTTACGT 155532 |||||||||||| ||||||||||| ||||| | || ||| | || ||| || || | Sbjct 840625 TGGGTAAAAATTAACATCAATAATTTTATTAAGGTTCTGT-GTGATTATCTTTGTGACTT 840683 Query 155533 CTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATACCAAGACCAATAG 155592 || || || | | ||| |||||||||| ||||| |||||| || | | |||| | Sbjct 840684 CTTTCAACTTTATAAAGTTGTATGTTTTATCTTCATTAACAAACCTATTCAAAGCAATTG 840743 Query 155593 ACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCTCACAGCAC 155651 | || | |||||| || ||| || | || | | ||||||| ||||| || |||| Sbjct 840744 AAGCTAAATTACAAACAGCAACTTCATCTGCTGAAG-TGTATTCCACAATTTCGGTGCAC 840802 Query 155652 AGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCC 155711 | ||| | || |||||||| | ||| || || ||| ||| || ||||| | ||| Sbjct 840803 AAATTACTGCATTTTATGGTGCCAAGATTTTTTTGATTACTTTTTCTATTACATGAATCT 840862 Query 155712 TTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT--CTTTAGCCAGA 155769 || || || |||||||| || || || |||| ||||| || | || |||| ||| | Sbjct 840863 TTATACAGCATGTATGGTGTGCCCGTTTCCACTTGTGCTTCTATTATTGCTTT--CCACA 840920 Query 155770 GGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCG 155829 | || | || | |||||| |||| |||| |||||||| ||||| | Sbjct 840921 GTTCTTGAGCTCGGACTTGCTTAACAAATCTTTTTTCCTGTTCATATTTTTCATACAATG 840980 Query 155830 TTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCG 155889 | | || || || |||||||| || || ||||| | || || || | || Sbjct 840981 CTTCAAATTCTTCTCCCCAACAATCAGCAAGACCGGGGCAATCATGAGGACACATTAGAC 841040 Query 155890 ACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGA 155949 ||| |||| || |||||| | |||||||| ||| ||| | || || | Sbjct 841041 TCCACATTTCATCTTTTTCTACACGTTTCATAAATAAATCTGGGATCCATAAGGCGTAAA 841100 Query 155950 AAAGGTCCCTTGCCTTTGA-CTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCC 156008 | | || || | || || ||| || | ||| |||||| || ||||| || || Sbjct 841101 ATAATTCTCTAG-CTCGGACCTCTTCTTTGCCAGTATTCTTTTTCAGATCTAAAAACTCA 841159 Query 156009 TCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA-ACTACCATTC--CTCTTGCCA 156065 || ||||| || || || || || |||||||| || || || | ||||| Sbjct 841160 AAAACATCAGAGTGCCAAGGTTCAAGGTAAATAGCAAATGCTCCCGGTCGTTTATTGCCT 841219 Query 156066 CCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTG 156125 || || || ||||||| || || |||||| | || | | ||| || | | |||||| Sbjct 841220 CCTTGGTCGACATACCTGGCTGTATTATTGTACACTCTCAACATTGGCACGAGGCCATTG 841279 Query 156126 GAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGT 156185 ||| ||||| || || || | | ||| || | | ||||| ||| || Sbjct 841280 GAAACTCCATTAGTACCAGCTATGTAGGTACCTTTTGCCCTGATGCAATGAACATGAAGG 841339 Query 156186 CCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCT 156245 || |||||||| | |||| || ||| || |||| |||| || | | ||||| Sbjct 841340 CCTATACCACCAGCAGATTTTGAGATTAAGGCACATTGTTTTAGTGTGTCATATATACCC 841399 Query 156246 TCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTT 156305 ||||| |||||||| ||| | || || |||| ||| |||||| |||| ||| ||| Sbjct 841400 TCAATGCTATCATCTTTCATAGCTATAAGGAAGCAAGAAGATAATTGTGGTCTTGGAGTT 841459 Query 156306 CCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTAT 156365 | || ||||| ||| || | |||||| ||||||| || | ||| | ||| ||| Sbjct 841460 GCTGCTGAGAATAATGTGGGACTGGCATGAGTAAAATATTTTTCAGATAACAAATTGTAA 841519 Query 156366 GTCTCCTTAAT--CT-TCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCAC 156422 || || ||| || |||| | ||||| || | || ||||| | |||| | Sbjct 841520 GTTTC---AATGGCTGAATCAATGTCTTCACCGTGGATTCCAATCGAGACTCGCATCAGC 841576 Query 156423 ATATGCTGAGGACGCTCTACAATC 156446 ||||||||||| | || ||||| Sbjct 841577 ATATGCTGAGGTCTTTCAGCAATC 841600 >seq53576 Length=1474168 Score = 100 bits (110), Expect = 8e-16 Identities = 218/324 (67%), Gaps = 2/324 (1%) Strand=Plus/Minus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 || ||| ||||||| ||||||||||| ||||| || | | || |||| || || | Sbjct 321206 CTCTTTCTACCAACCGCATCAATTTCATCAATAAACAAAATGCAAGGAGCATGTTTACGT 321147 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || || | ||| | || | || | || | |||| |||||| ||||||| | |||| Sbjct 321146 GCCATAGAAAACATATCACGAACTCTAGAAGGACCAACGCCAACAAACATTTCCAAAAAT 321087 Query 289141 TCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 |||||| | || || |||||| | ||||||||||| || ||| ||| | ||||| Sbjct 321086 TCAGAACCAGACACCGTAATGAAGGGGACATTTGCTTCACCAGCTGTTGCTTTAGCCAGT 321027 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCA 289260 | ||||| || || ||||| || || | | | || ||||| | ||| || || Sbjct 321026 AAAGTCTTTCCAGTACCAGGAGGGCCAGTAAGCAATGCACCTTTTGGAATTTTAGCTCCT 320967 Query 289261 GCAGACTTATATTTCTCAGGGCTCTTTAA-AAATTCTACAATTTCCTCAAGTTCATATTT 289319 | | || | | ||| | || || |||||| |||| |||| || ||| ||| Sbjct 320966 AAATCGATGTACTGTTGAGGATTTTTCAAGAAATTC-ACAAATTCCATAATCTCAATTTT 320908 Query 289320 TGCCTCATCACATCCTGCTACATC 289343 ||| || ||||| || || ||||| Sbjct 320907 TGCTTCTTCACAACCAGCAACATC 320884 >seq23474 Length=2349451 Score = 100 bits (110), Expect = 8e-16 Identities = 212/309 (69%), Gaps = 12/309 (4%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || |||||||| |||||||| ||||| || ||||| ||||| ||| Sbjct 1587407 TCCATAGCCTTTATCAAACGACGTTGAATATATCCAGTCTCAGCAGTTTTAACAGCAGTA 1587348 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCG--GTCGT-AGC 302691 ||||| ||||| |||||||||||||||| || | ||||| | |||| | ||| | Sbjct 1587347 TCAATAAGACCTTCACGACCACCCATAGCGTG--AAAATAGAAC-TCCGATGGCGTCAAG 1587291 Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTG 302748 || ||| | | || | || || || || | | || || || ||||||| || Sbjct 1587290 CCGGCAAGATAAGAATTTTCTACAAAGCCTCTAGATTCAGGACCGTAATCGTC---TTTA 1587234 Query 302749 GTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTC 302808 |||| ||||| | || | || | |||| |||| ||||| || || || ||||| Sbjct 1587233 ATAAAATGTGGTAATGTTCGCTTTCGAAAGCCAAATGGAATACGTTTACCTTCTACGTTT 1587174 Query 302809 TGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAGCA 302868 ||||| |||| || | ||| | || || ||||| | || || || || || ||| Sbjct 1587173 TGCTGACCCACACAAGCAATAACTTGAGATATATTAATATTTGAACCTTTTGAACCTGCA 1587114 Query 302869 TTTACCATA 302877 ||||||| Sbjct 1587113 ACTACCATA 1587105 Score = 84.2 bits (92), Expect = 6e-11 Identities = 103/139 (74%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 301814 GAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAA 301873 || || ||||||| || || |||||| | |||||||| ||||| | |||||||||| Sbjct 1588182 GATTTCCTTCAAT-CGCGGTACACCAAGTGTTACGTTT---TTGGATGATACACCAGCAA 1588127 Query 301874 AGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCA 301933 |||||||||| |||| || | ||||| | || || |||| |||||| || | Sbjct 1588126 AGTGGAAAGTGTTCAATGTCATCTGAGTGGCAGGTTCTCCAAGTGATTGTGCAGCTAAAG 1588067 Query 301934 TACCAACCATTTCTCCTGG 301952 ||||||||||||||||| Sbjct 1588066 CTCCAACCATTTCTCCTGG 1588048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470626040848019