Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq18715 262 3e-65 seq21925 199 3e-46 seq9460 114 1e-20 seq61578 91.5 1e-13 >seq18715 Length=1377716 Score = 262 bits (290), Expect = 3e-65 Identities = 664/996 (67%), Gaps = 33/996 (3%) Strand=Plus/Plus Query 28803 GTCGCTGCGTATTTTGTGGAATGGAGCGTGTACGGCCGCAACTTTTCGGTGGACAAGGTG 28862 |||| ||||| ||||| |||||| | || ||| | || || | || || || Sbjct 1369999 GTCGGAGCGTACTTTGTTGAATGGGGTGTTTACCCAAGAAAATTCCCAGTCGATCGTGTA 1370058 Query 28863 CCGCTGCCCAACCTCTCGCATCTGTTATACGGCTTCGTACCTATTTGCGGCGGCGACGGG 28922 ||| | || || || ||||||| || ||||| ||| | ||||||||||| |||||||| Sbjct 1370059 CCGATTCCTAATCTGACGCATCTTTTGTACGGTTTCATTCCTATTTGCGGAGGCGACGGC 1370118 Query 28923 CTCAACGACGCCCTTAAAACCATACCC--GGTAGTTTTGAAGCGCTGCAACGTTCGTGCA 28980 |||||||| || ||| | | | || ||||| |||| || ||||| || |||| Sbjct 1370119 ATCAACGACAG--TTTAAAGGAGATCGAAGGCAGTTTCCAAGCTCTTCAACGATCATGCA 1370176 Query 28981 ACGGCCGTTCAGATTTTAAAGTTGCTATTCACGATCCTTGGGCCGCAATACAAAAACCGC 29040 |||||| |||||| |||||| |||||||||| || |||||||| | || || || | Sbjct 1370177 GCGGCCGCGAAGATTTCAAAGTTTCTATTCACGACCCGTGGGCCGCTCTTCAGAAGCCAC 1370236 Query 29041 AAAAGGGCGTGTCTGCGTGGAACGAGCCCTACAAAGGCAATTTCGGTCAGCTCATGGCTG 29100 | ||||| ||||| | ||||| || || ||||||||||| || |||||||| ||| || Sbjct 1370237 AGAAGGGACTGTCTTCCTGGAATGAACCATACAAAGGCAACTTTGGTCAGCTGATGTCTC 1370296 Query 29101 CCAAGTTGGCCAATCCACACATCAAAATTCTACCGTCCATAGGCGGCTGGACATTGTCCG 29160 ||| |||| || | | ||||||||||| ||||| || |||||||| | ||| Sbjct 1370297 TCAAACAAGCCAGGCCTGAACTTAAAATTCTACCTTCCATCGGAGGCTGGACTCTTGCCG 1370356 Query 29161 A-CCCTTTTTAT--TTTATGCACGACGCGGAGAAACGGCGCGTGTTTGTGGACTCGGTCG 29217 | ||||| || | || | || | | | ||| | | ||| || || || || || Sbjct 1370357 ATCCCTTCTTCTTCTTCACCGACAAAGAGAAGAGAGGTCGC---TTCGTTGATTCTGTGA 1370413 Query 29218 AGGAATTTTTGCAGGTGTGGAAATTTTTTGACGGCGTAGACATTGACTGGGAATTTCCGG 29277 | || ||| | | ||||| || || ||||| || || || || |||||||| || | Sbjct 1370414 AAGATTTTCTTCTAACCTGGAAGTTCTTCGACGGTGTTGATATCGATTGGGAATTCCCTG 1370473 Query 29278 GCGGTAAAGGCGCTAACCC-GACACTTGGCAACGGGGAGCGCGACGCCGACACGTATAAC 29336 ||||||| || |||||||| ||| || || | | || |||| || | || | || Sbjct 1370474 GCGGTAAGGGAGCTAACCCTGAC-CTAGGAAGCCCTAAG---GACG--GAGATGT-TTAC 1370526 Query 29337 ATT---TTACTGAAGGAATTGCGCGCAATGCTGGATAAACTGCAATTGCAAACGGGTAAA 29393 || ||| ||||||||||||| | |||| || | | || | || ||||| Sbjct 1370527 GTTGAATTAATGAAGGAATTGCGTGAAATGTTGAACGACCTTTCTGAAGAGACCGGTAAG 1370586 Query 29394 ACGTATGAATTGACAAGCGCAATCAGCTCTGGCCACGACAAAATTGCTGTAGTGAAATAC 29453 | || || |||| ||| || || |||| || || ||| || || | ||| Sbjct 1370587 AAATACGAGCTGACTTCCGCTATTAGTGCTGGATGGGATAAGATTCAAGTGGTCGATTAC 1370646 Query 29454 GACGTTGTGCAAAAATTTCTTGATAAAATATTTCTAATGAGTTACGATTTTAAAGGCGCA 29513 || | || |||| | ||| | || || || |||||||| |||||||||||||| Sbjct 1370647 AGCGAGGCTCAGAAATACATGGATCACATTTTCCTCATGAGTTATGATTTTAAAGGCGCC 1370706 Query 29514 TGGTCAA---ACACCGATTTGGGATATCAAACTACACTCTACGCACCGAGTTGGAATCCC 29570 ||||| | ||||| | || |||| || | || ||||| || |||||| ||| Sbjct 1370707 TGGTCTAATGACACC---CTCGGTCATCAGACACCGCTTTACGCTCCTGCTTGGAACCCC 1370763 Query 29571 AACGAGCTTTACAACACTGACCACGCCGT---AAAGTCGCTCACTAACCAAGGCGTGGAC 29627 || || ||| | ||||||| | || | | | ||| || |||||||| || Sbjct 1370764 AAGGAAACTTATACCACTGACTTTGGTGTGAAATATTTGCTTGCT---CAAGGCGTCAAC 1370820 Query 29628 CCGCGCAAAATTATTGTGGGCGTCGCCATGTACGGCCGCGGTTGGACGGGCGTGACCGGT 29687 || || ||| | ||||| || || |||||||| || || ||||| || || | Sbjct 1370821 CCTAAGAAGATTGTGGTGGGTGTAGCTATGTACGGACGAGGCTGGACCGGGGTTCACAAC 1370880 Query 29688 TACGTCGGTGACAACTATTTTAAAGGCACAGCTGCCGGGCCCGTGACCGGCACTTGGGAT 29747 |||| | |||| || | |||| || | || || || | || |||||| | Sbjct 1370881 TACGAAAATAACAATCCATTCACTGGCAACGCGACTGGACCTGTCAAAGGTACTTGGCAA 1370940 Query 29748 GACGGAGTTGTCGACTATCGTCAAATaaaaaaaGAA 29783 ||||| || || || ||| | ||||| ||| ||| Sbjct 1370941 GACGGTGTAGTTGATTATAGAGAAATAGCAAATGAA 1370976 >seq21925 Length=2008241 Score = 199 bits (220), Expect = 3e-46 Identities = 139/158 (88%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 34490 TGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGC 34549 |||| || | || ||||||||||| | ||||||||||||||||||||| |||||||||| Sbjct 1596661 TGGCGGGTCTGCCGAGCGCCTTGGCCACTTCGGGCATGTTGACGATGACCGTCTTGATGC 1596602 Query 34550 CGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGT 34609 |||||||||| || || ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1596601 CGTTGCCCTTGCCCTCCACCTTGGCGCAGATGCGCGGCATCTTGTAGCGGTAGAACGCGT 1596542 Query 34610 CCGCCACATTGCGGTTAACGTTCACAGTCCCCATCGTG 34647 |||||||||| || || ||||| || | |||||| ||| Sbjct 1596541 CCGCCACATTACGATTCACGTTGACCGACCCCATGGTG 1596504 Score = 152 bits (168), Expect = 4e-32 Identities = 134/167 (80%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 34201 GCCGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGA 34260 || |||||||| |||||||||||||| |||||||| || ||| | || | |||||| Sbjct 1597275 GCGGGCGGGTTCTTCAGTATGAAGGTATTGAGCTTGTGGTTGAACTCGAGGGCGCCGTGG 1597216 Query 34261 TAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCA 34320 || ||||| || ||||||||||| |||| ||||||| || | |||||||| ||||| Sbjct 1597215 TAGCCGCACGCCTTGCAGCCCTGCGAGATGCTGTTCTTCTTCGTCGACACGATCAGCTCC 1597156 Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAA 34367 |||||||| ||||| || ||||| |||| ||| |||||||| ||||| Sbjct 1597155 GTCTCCGGATTGTCGCACTCCGGGCACAGCACGAACTTGCGAATGAA 1597109 Score = 125 bits (138), Expect = 6e-24 Identities = 144/195 (74%), Gaps = 9/195 (5%) Strand=Plus/Minus Query 33585 GGCCACTTTGGGCAGCAGCGCCTGGTCCAAAACGCAcagcgcggtgagcgcg-------- 33636 || ||| ||||||||||| ||||| | | |||| || |||||||||||| Sbjct 1598470 GGTCACCTTGGGCAGCAGGTTCTGGTGTAGAGCGCAGAGTGCGGTGAGCGCGTTGAGCAC 1598411 Query 33637 -gcccgctgcgcgcgcagatcgccgcgcgtaaactgcagcagcagcgcgcggtacttgcg 33695 || ||||| ||||| | ||||||||||| | |||||||||| | || | ||| Sbjct 1598410 GGCGCGCTGGGCGCGGGGCTCGCCGCGCGTCAGACGCAGCAGCAGAGGACGCTGCTTCTT 1598351 Query 33696 cACGTCCCCGGCGAACGCCGCCGGCCTCACCAGCACCTCGAACAGCACCAGCGGCGCCTT 33755 ||||||| | || | || |||||||||||||||||||||||| ||||||||||||| | Sbjct 1598350 CACGTCCGCCGCCAGCGAGCCCGGCCTCACCAGCACCTCGAACACCACCAGCGGCGCCCT 1598291 Query 33756 CGACTTCACCTCCAG 33770 | ||||||||| Sbjct 1598290 CTCACGCACCTCCAG 1598276 Score = 123 bits (136), Expect = 2e-23 Identities = 98/118 (83%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 34369 CCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCG 34428 || || ||||||||||| | ||| ||||||||||| ||||||||||||||| || ||| Sbjct 1597002 CCGTCCAGCAGGTCCTGAAGCTTGGCGGAGTCGTGGCTGCCGTTGACGATGAAGCGCTCG 1596943 Query 34429 TTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGT 34486 || ||| | |||| ||| || ||||| ||||||||||| ||||||||||| || |||| Sbjct 1596942 TTCTTGAAGTCGAACTGGGTCTGCGCACCCAGCTCGCAGCCGAAGTACTTGGTGGGGT 1596885 >seq9460 Length=1391182 Score = 114 bits (126), Expect = 1e-20 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 103321 CAACGGGTTCTACTATTTGGGCCGCAGCGACGAGGTGCGCTGCGCGTTTTGCAAAGTGGA 103380 |||||| |||||||| | |||||| |||||||||| |||||||| ||||| ||||| || Sbjct 538632 CAACGGCTTCTACTACCTCGGCCGCGGCGACGAGGTCCGCTGCGCCTTTTGTAAAGTCGA 538691 Query 103381 AATCATGCGCTGGATGAATGGCGACGACCCGGAGAGCGACCATAAAAAGTGGGCGCCTCG 103440 ||||||||||||| || | ||||||||||| | | ||||| | |||||| || | Sbjct 538692 AATCATGCGCTGGGTGGAGGGCGACGACCCCGCTAAGGACCACCAGCGGTGGGCCCCGCA 538751 Query 103441 ATGCCCGTTTTTG 103453 ||||| ||| || Sbjct 538752 GTGCCCCTTTCTG 538764 >seq61578 Length=3623949 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| |||||||| || || ||||| ||| ||||| || ||| Sbjct 3475975 ATGCAGATCTTCGTCAAGACTTTAACAGGAAAGACCATCACCCTCGAAGTTGAACCTTCA 3476034 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | || ||| || || ||||||||||| | ||| || || Sbjct 3476035 GACACTATGGAGAACGTTAAAGCTAAAATCCAAGACAAAGAAGGTATCCCCCCAGACCAG 3476094 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | ||||| | || || |||||| ||||||||| | ||| | | ||||||||| Sbjct 3476095 CAACGTCTTATCTTCGCCGGCAAACAGTTGGAGGATGGTCGTACACTCTCCGATTACAAC 3476154 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || || || ||||| | ||| ||||| Sbjct 3476155 ATCCAGAAGGAGTCTACTCTTCACTTGGTG 3476184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412523674167191