Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq43931 143 4e-28 seq40360 143 4e-28 seq52528 91.5 2e-12 seq43624 86.0 1e-10 >seq43931 Length=2439668 Score = 143 bits (158), Expect = 4e-28 Identities = 180/245 (73%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| |||||||||||||| || || || |||||||||| |||| | ||| ||| ||| Sbjct 171280 TGTATTTGGTGACGGCCTTTGTGCCTTCACTGACGGCGTGCTTGGCTAATTCACCGGGCA 171339 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 | ||| | ||||| ||||| | ||| | | || || ||||||||| ||| Sbjct 171340 GTAGCAGTCTCACGGATGTCTGCACCTCCCTTGATGTTATGGTAGAGCGCTTGTTGTAGT 171399 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || ||| |||||| | |||| || |||| ||||||||||| ||||| || Sbjct 171400 GGGCG--AGACGGGAGGCCTCAGCCGCGATACGTTCGAAGATGTCGTTGACGAACGAATT 171457 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||||| | ||| | || || || |||||||||||| || |||||||| || Sbjct 171458 CATGATAGACATGGCCTTGCTCGATATACCGGTGTCGGGGTGCACTTGTTTGAGCACTTT 171517 Query 1485708 GTAAA 1485712 ||||| Sbjct 171518 GTAAA 171522 Score = 143 bits (158), Expect = 4e-28 Identities = 180/245 (73%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| |||||||||||||| || || || |||||||||| |||| | ||| ||| ||| Sbjct 179211 TGTATTTGGTGACGGCCTTTGTGCCTTCACTGACGGCGTGCTTGGCTAATTCACCGGGCA 179270 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 | ||| | ||||| ||||| | ||| | | || || ||||||||| ||| Sbjct 179271 GTAGCAGTCTCACGGATGTCTGCACCTCCCTTGATGTTATGGTCGAGCGCTTGTTGTAGT 179330 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || ||| |||||| | |||| || |||| ||||||||||| ||||| || Sbjct 179331 GGGCG--AGACGGGAGGCCTCAGCCGCGATACGTTCGAAGATGTCGTTGACGAACGAATT 179388 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||||| | ||| | || || || |||||||||||| || |||||||| || Sbjct 179389 CATGATAGACATGGCCTTGCTCGATATACCGGTGTCGGGGTGCACTTGTTTGAGCACTTT 179448 Query 1485708 GTAAA 1485712 ||||| Sbjct 179449 GTAAA 179453 >seq40360 Length=19948 Score = 143 bits (158), Expect = 4e-28 Identities = 180/245 (73%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| |||||||||||||| || || || |||||||||| |||| | ||| ||| ||| Sbjct 2279 TGTATTTGGTGACGGCCTTTGTGCCTTCACTGACGGCGTGCTTGGCTAATTCACCGGGCA 2338 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 | ||| | ||||| ||||| | ||| | | || || ||||||||| ||| Sbjct 2339 GTAGCAGTCTCACGGATGTCTGCACCTCCCTTGATGTTATGGTCGAGCGCTTGTTGTAGT 2398 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || ||| |||||| | |||| || |||| ||||||||||| ||||| || Sbjct 2399 GGGCG--AGACGGGAGGCCTCAGCCGCGATACGTTCGAAGATGTCGTTGACGAACGAATT 2456 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||||| | ||| | || || || |||||||||||| || |||||||| || Sbjct 2457 CATGATAGACATGGCCTTGCTCGATATACCGGTGTCGGGGTGCACTTGTTTGAGCACTTT 2516 Query 1485708 GTAAA 1485712 ||||| Sbjct 2517 GTAAA 2521 >seq52528 Length=608789 Score = 91.5 bits (100), Expect = 2e-12 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 2019195 CTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCG 2019254 |||||||| || || || ||| | | || || || ||||| ||| || | || || | Sbjct 524714 CTGCCGCCGGGTCGGCATAAGATAGTGATACTGGACGAGGCAGACAGCATGACAGAGGGG 524773 Query 2019255 GCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTG 2019314 || |||||||| || || |||||||| |||| |||| || || ||||| ||||| Sbjct 524774 GCGCAGCAGGCGCTGCGGCGCACCATGGAGCTGTACGCCAATACCACCCGGTTCGCGCTC 524833 Query 2019315 GCCTGCAACACGTCGTCGATGG--TCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGC 2019372 ||| ||||| | ||| | |||| ||| || | ||| ||||||||| | ||| Sbjct 524834 GCCGCCAACAA--CAGCGAGCGCATCATAGAACCCATACAGTCGCGTTGCGCCGTGCTGC 524891 Query 2019373 GCTTTGCGCGCCTCACCGACGCCCAGAT 2019400 | | |||| ||||| ||||||||||| Sbjct 524892 GATACTCGCGACTCACTGACGCCCAGAT 524919 >seq43624 Length=797805 Score = 86.0 bits (94), Expect = 1e-10 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 1812784 GCCTCGGTGGCGCAGTTGGCGGCGCGCCAATCCCATAAATTGGAGGTCGTGAGTTCGATC 1812843 |||||||||||||||| ||| ||||| | || ||||| | ||||||||||||||||| Sbjct 388012 GCCTCGGTGGCGCAGTAGGCAGCGCGTAAGTCTCATAATCTTAAGGTCGTGAGTTCGATC 388071 Query 1812844 CTCACCCGAGGTATATC 1812860 |||||||| || ||||| Sbjct 388072 CTCACCCGGGGCATATC 388088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7909524910614093