Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq18715 174 1e-38 seq48925 125 5e-24 seq61578 104 2e-17 >seq18715 Length=1377716 Score = 174 bits (192), Expect = 1e-38 Identities = 638/985 (65%), Gaps = 17/985 (2%) Strand=Plus/Minus Query 5551 GCTATGTTTCTGTAATCCACCACACCGTCTTCCCAAGTGCCTGCAATCTTGTCG-GTCGC 5609 ||||| | ||| ||||| || |||||||||| |||||| ||| | | ||| ||||| Sbjct 1370969 GCTATTTCTCTATAATCAACTACACCGTCTTGCCAAGTACCTTTGA-CAGGTCCAGTCGC 1370911 Query 5610 CACACCGGTGAATACATTGTTGTTCACCTGGTCGTGCACTCCGGACCACCCACGACCGTA 5669 || |||||| |||||| || | | || ||| || |||| ||| || || ||||| Sbjct 1370910 GTTGCCAGTGAATGGATTGTTATTTTCGTAGTTGTGAACCCCGGTCCAGCCTCGTCCGTA 1370851 Query 5670 CATGGCTACTCCCACAATTAGCTTCCTCGACTCGACGCTCTGATTTAGCAGACGCCTGAC 5729 ||| ||||| ||||| | | |||| | | | ||||| ||| |||| | | || Sbjct 1370850 CATAGCTACACCCACCACAATCTTCTTAGGGTTGACGCCTTGAGCAAGCAAATATTTCAC 1370791 Query 5730 GGAAAAATCGGTCGTGTACGTTTCGCCTGGGTTCCACGATGGAGCGAACAGAGGTGTCTG 5789 ||| || || || || ||||| |||||||| | |||||| | || |||||||| Sbjct 1370790 ACCAAAGTCAGTGGTATAAGTTTCCTTGGGGTTCCAAGCAGGAGCGTAAAGCGGTGTCTG 1370731 Query 5790 GTGTCCCAGATCCGTCAAC-GACCAGGCACCCTTGTAATCGTACGTCATGACAAATATGT 5848 || || || |||| |||||||| || || |||| || |||||| || |||| Sbjct 1370730 ATGACCGAGGGT-GTCATTAGACCAGGCGCCTTTAAAATCATAACTCATGAGGAAAATGT 1370672 Query 5849 GATCAAGGTATTTTTGTGCGGTGGCGTAGTCGACGACGTCGATCTTGTCGTGTCCCGCGC 5908 |||| | |||||| || || | ||| ||||| || | ||||| || ||| || | Sbjct 1370671 GATCCATGTATTTCTGAGCCTCGCTGTAATCGACCACTTGAATCTTATCCCATCCAGCAC 1370612 Query 5909 CGACGGCGCTCGTCAACT-GTAGCCGTCTACCCCGCTTCTCGCCCAACTCATCAAGCATC 5967 | ||| |||| || ||| | |||| || || | || | | ||| Sbjct 1370611 TAATAGCGGAAGTCAGCTCGTATTTCT-TACCGGTCTCTTCAGAAAGGTCGTTCAACATT 1370553 Query 5968 ACGCGAAGTTCCCGCAGCAAAAGAGTGTAGGTGTTGCGATCCACCTCGGCATTACCCAAC 6027 | || | |||| || || | ||| | | ||| | || || || | Sbjct 1370552 TCACGCAATTCCTTCATTAATTCAACGTAAACATCTCCGTCCT--TAGGGCTT-CCTAGG 1370496 Query 6028 ACAGAATTGGCACCCTTTCCACCCGGAAACTCCCAGTCGATGTCCACTCCGTCAAAGAAC 6087 ||| || || ||||| || || || || ||||| ||||| || || ||||| |||||| Sbjct 1370495 TCAGGGTTAGCTCCCTTACCGCCAGGGAATTCCCAATCGATATCAACACCGTCGAAGAAC 1370436 Query 6088 TTCCAGGTCTCCAGAAACTCGCGGACGCTTGTGACGAAC--ACCTCACGCTTAGAGTCAT 6145 |||||||| ||||| || || ||||| ||||| | || | | Sbjct 1370435 TTCCAGGTTAGAAGAAAATCTTTCACAGAATCAACGAAGCGACCTCTC--TTCTCTTTGT 1370378 Query 6146 CGTTCATGAAATAAAACGGATCGCTCAACGTCCACCCCCCTATGGATGGTAGGACCGTCA 6205 || | | ||| | || |||||| | ||||| || || ||||| ||||| | | | Sbjct 1370377 CGGTGAAGAAGAAGAAGGGATCGGCAAGAGTCCAGCCTCCGATGGAAGGTAGAATTTTAA 1370318 Query 6206 ACGAGGGGTTGTGACGTTTGATGGCCATCAGCTGGCCAAAGTTACCCTTGTACTCTTCGT 6265 || || |||||| | ||||||||| |||||||| || ||||| ||| | Sbjct 1370317 GTTCAGGCCTGGCTTGTTTGAGAGACATCAGCTGACCAAAGTTGCCTTTGTATGGTTCAT 1370258 Query 6266 TGTACGCCTCAACACCTTTCTGTGGTTTTTGCAACGCGGCCCAGATGTCGTGAATACTTA 6325 | | | | || |||||||| || || | |||||||| |||||||||| | Sbjct 1370257 TCCAGGAAGACAGTCCCTTCTGTGGCTTCTGAAGAGCGGCCCACGGGTCGTGAATAGAAA 1370198 Query 6326 CCTTGAAGTCATCGCGACCAGCGCAGGATTTCTGTAGCGCCTCAAAG--GAATTGGGAAT 6383 | ||||| || ||||| || ||| ||| || || || | || | || | || Sbjct 1370197 CTTTGAAATCTTCGCGGCCGCTGCATGATCGTTGAAGAGCTTGGAAACTGCCTTCG--AT 1370140 Query 6384 CTGCTTGAGGGCGTCGTTTATGCCGCTACCACCACAAATTGGAATGAACCCGTACAGCAG 6443 || ||| | |||||| |||||| || || ||||| |||||||| ||||||| || Sbjct 1370139 CTCCTTTAAACTGTCGTTGATGCCGTCGCCTCCGCAAATAGGAATGAAACCGTACAAAAG 1370080 Query 6444 GTGCGTCAGATTAGGTATTGGTACCTTGTCAATGGGAAACTGTCTGCCATACACTCCCCA 6503 |||||||||||||| || ||||| || | || || | ||| || || ||||| Sbjct 1370079 ATGCGTCAGATTAGGAATCGGTACACGATCGACTGGGAATTTTCTTGGGTAAACACCCCA 1370020 Query 6504 CTCCACGAAATACGCACCGACGACT 6528 || || || ||||| ||||| ||| Sbjct 1370019 TTCAACAAAGTACGCTCCGACAACT 1369995 >seq48925 Length=1097090 Score = 125 bits (138), Expect = 5e-24 Identities = 169/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 34746 CATTTCCTCCCCTCAACCTCAGGACCAGGTGAA-TGGTGCTCTCCTTCTGAATGTTATAG 34804 |||| ||||| | | ||||| |||| ||||| || || | |||||||| ||||| ||| Sbjct 515408 CATTACCTCCTCGAAGCCTCAACACCAAGTGAAGTGTTGAT-TCCTTCTGGATGTTGTAG 515350 Query 34805 TCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCT 34864 || || | | || |||| || | || || ||||||||||||| || |||||| ||| Sbjct 515349 TCGGACAACGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCT 515290 Query 34865 TGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCC 34924 | || | ||||| ||||| | ||||| ||| || | | || | ||| ||| Sbjct 515289 GGTGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCT 515230 Query 34925 TCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | |||||||| || ||||||||||| ||||| ||||||||||| Sbjct 515229 TCAACCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCAT 515177 >seq61578 Length=3623949 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||||||||| ||||| || | |||| |||| |||| || || |||||||| Sbjct 3474631 CTCTTTCTGAATGTTGTAGTCAGACAATGTGCGTCCATCTTCCAACTGTTTGCCGGCGAA 3474572 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| || |||||||||| | || | ||||||||||| | || || || || Sbjct 3474571 GATCAATCTTTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTAACATT 3474512 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | || || || || || | || |||||||| || || | |||||| || Sbjct 3474511 TTCAATTGTGTCCGAGGGTTCAACTTCTAATGTGATGGTCTTGCCAGTCAAGGTCTTGAC 3474452 Query 34966 AAAGATCTGCAT 34977 |||||||||||| Sbjct 3474451 AAAGATCTGCAT 3474440 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||||||||| ||||| || | |||| |||| ||||| || || |||||||| Sbjct 3474403 CTCTTTCTGAATGTTGTAGTCAGACAATGTGCGTCCATCTTCCAGCTGTTTGCCGGCGAA 3474344 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| || ||||||||| | || | ||||||||||| | || || || || Sbjct 3474343 GATCAATCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTAACATT 3474284 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | || || || || || | || ||||| || || || | |||||| || Sbjct 3474283 TTCAATTGTGTCCGAGGGTTCAACTTCTAATGTGATGGTTTTGCCAGTCAAGGTCTTGAC 3474224 Query 34966 AAAGATCTGCAT 34977 |||||||||||| Sbjct 3474223 AAAGATCTGCAT 3474212 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| || || ||||||||||| ||||| | || |||| |||| || || |||||||| Sbjct 3475938 CTCTTTTTGGATGTTATAGTCTGATAGTGTACGACCATCCTCCAACTGTTTGCCGGCGAA 3475879 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || |||||||||||| | || | || || ||||| | ||||| ||| ||| Sbjct 3475878 GATAAGACGTTGCTGGTCTGGGGGGATACCTTCTTTGTCTTGGATTTTAGCTTTAACGTT 3475819 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | || || || || || | ||| || ||||| || || | |||||| || Sbjct 3475818 CTCGATAGTGTCTGAGGGTTCAACTTCGAGGGTAATAGTCTTGCCAGTCAAGGTCTTGAC 3475759 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 3475758 GAAGATCTGCAT 3475747 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| || ||||||||| ||||| || || || || | || |||| Sbjct 3476186 AGCACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGAGAGTGTACGACCATCC 3476127 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| || || ||||||||||| || |||||||||||| | || | || || ||||| Sbjct 3476126 TCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGGATACCTTCTTTGTCT 3476067 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| ||| ||| | || | || | || || || | ||| |||||| Sbjct 3476066 TGGATTTTAGCTTTAACGTTCTCCATAGTGTCTGAAGGTTCAACTTCGAGGGTGATGGTC 3476007 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | ||||| || ||||||||||| Sbjct 3476006 TTTCCTGTTAAAGTCTTGACGAAGATCTGCAT 3475975 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||||||||| ||||| || | |||| |||| ||||| || | |||||||| Sbjct 3474175 CTCTTTCTGAATGTTGTAGTCAGACAATGTGCGTCCATCTTCCAGCTGTTCGCCGGCGAA 3474116 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| || |||||| || | || | ||||||||||| | || || || || Sbjct 3474115 GATCAATCTCTGCTGGGCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTAACATT 3474056 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | || | ||| || || | ||| |||||||| ||||| | |||||| || Sbjct 3474055 TTCAATTGTGTCCGAAGGCTCCACCTCTAAGGTGATGGTCTTGCCCGTCAAGGTCTTCAC 3473996 Query 34966 AAAGATCTGCAT 34977 || |||||||| Sbjct 3473995 GAAAATCTGCAT 3473984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325441986722753