Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq9460 340 1e-88 seq18715 300 1e-76 seq61578 82.4 6e-11 seq23042 82.4 6e-11 >seq9460 Length=1391182 Score = 340 bits (376), Expect = 1e-88 Identities = 387/513 (75%), Gaps = 15/513 (3%) Strand=Plus/Plus Query 103567 CAACGGGTTCTTCTACTTGGGCCGCGGCGACGAAGTGCGCTGCGCGTTTTGCAAAGTGGA 103626 |||||| |||| |||| | |||||||||||||| || |||||||| ||||| ||||| || Sbjct 538632 CAACGGCTTCTACTACCTCGGCCGCGGCGACGAGGTCCGCTGCGCCTTTTGTAAAGTCGA 538691 Query 103627 GATTATGCGCTGGGAGGAGGGCGACGACCCGGCTCGCGATCATCAGAGGTGGGCGCCGCA 103686 || |||||||||| ||||||||||||||| ||| || || ||| ||||||| ||||| Sbjct 538692 AATCATGCGCTGGGTGGAGGGCGACGACCCCGCTAAGGACCACCAGCGGTGGGCCCCGCA 538751 Query 103687 GTGTCCGTTCCTGaaaa---aaaCGGCTGCTGGC---GCGCTGCCCGCCGGCCTTGCGAT 103740 ||| || || |||| | || | || ||| | || || || ||| ||| Sbjct 538752 GTGCCCCTTTCTGAGGCGGCACGCGACCGCCGGCAACGTGCCGCTCGAGAGCC---CGAG 538808 Query 103741 GGACG--GGCAG-GACGAGTGCGGCGTGAGCGCGCTGCCGTCCACCAACGCCTGCGTGCG 103797 | || ||| | ||||||||||||||| |||| | ||| | ||| |||| |||||| Sbjct 538809 CGCCGCCGGCCGCGACGAGTGCGGCGTGCGCGCCCCGCCCAGCGCCA-CGCC--CGTGCG 538865 Query 103798 CATGCCCGGCCCCGCGCACCCTCGGTTCGCCTCCGAGGCCTCAAGGTTACAAACTTTTAA 103857 |||||||||||||| |||||| || | |||||||||||| | | | | || || || Sbjct 538866 CATGCCCGGCCCCGTGCACCCCCGATACGCCTCCGAGGCGGCGCGTCTCCGCACCTTCAA 538925 Query 103858 GGATTGGCCCCGGAGTCTGAAACAGAAACCGGAGAAGATGGCCGAAGCCGGATTCTACTA 103917 || ||||| ||| | || ||||||||| ||| || |||| || ||||| |||| ||| Sbjct 538926 AGACTGGCCGCGGTGCATGCGACAGAAACCAGAGGAGCTGGCGGAGGCCGGCTTCTTCTA 538985 Query 103918 CACCGGCCACAGCGACAACACGAAATGCTTCTACTGCGACGGTGGTCTAAAGGATTGGGA 103977 |||||||||| ||||||| ||||||||||||||||||||||| || || ||||| ||||| Sbjct 538986 CACCGGCCACGGCGACAAAACGAAATGCTTCTACTGCGACGGCGGCCTCAAGGACTGGGA 539045 Query 103978 GCACGATGATGAGCCGTGGCAACAACACGCGCTTTTCTTTCGCCGTTGCGCATACGTGCT 104037 | |||| || | |||||| | || ||||||| | || ||| ||||| ||||| | Sbjct 539046 GAACGACGACGTCCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGCTGCGCTTACGTTCA 539105 Query 104038 ACTTGTCAAGGGCCACGATTATGTACAAAAGGT 104070 || || || |||| ||| || |||||||| || Sbjct 539106 GCTGGTGAAAGGCCGCGACTACGTACAAAAAGT 539138 Score = 86.0 bits (94), Expect = 5e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 104291 AACGTGTGTTTTGTGCCGTGCGGGCATGTGGTGGCGTGCGTCAAGTGCGCGTTTGCTTTG 104350 |||||||| || |||||||||||||| ||||||||||||| |||||||||| | | | Sbjct 539290 AACGTGTGCTTCGTGCCGTGCGGGCACGTGGTGGCGTGCGCCAAGTGCGCGCTGTCGACG 539349 Query 104351 GCCGAGTGCCCCATGTGCCG 104370 | | ||||||| |||||||| Sbjct 539350 GACAAGTGCCCGATGTGCCG 539369 >seq18715 Length=1377716 Score = 300 bits (332), Expect = 1e-76 Identities = 670/994 (67%), Gaps = 25/994 (3%) Strand=Plus/Plus Query 29067 GTCGCTGCGTATTTTGTAGAATGGGGCGTATATGGCCGCAACTTTCCGGTAGACAAAGTG 29126 |||| ||||| ||||| |||||||| || || | || || || || || || Sbjct 1369999 GTCGGAGCGTACTTTGTTGAATGGGGTGTTTACCCAAGAAAATTCCCAGTCGATCGTGTA 1370058 Query 29127 CCGCTGCCCAACCTCTCGCATCTGTTGTACGGTTTCATACCTATTTGCGGCGGCGACGGG 29186 ||| | || || || ||||||| |||||||||||||| ||||||||||| |||||||| Sbjct 1370059 CCGATTCCTAATCTGACGCATCTTTTGTACGGTTTCATTCCTATTTGCGGAGGCGACGGC 1370118 Query 29187 CTCAACGACGCCCTCAAAACCATTCCCGGCAGTTTTGAGGCGCTGCAACGCTCTTGCAAG 29246 |||||||| | || || |||||||| | || || ||||| || |||| Sbjct 1370119 ATCAACGACAGTTTAAAGGAGATCGAAGGCAGTTTCCAAGCTCTTCAACGATCATGCAGC 1370178 Query 29247 GGCCGTTCAGATTTCAAAGTCGCTATTCACGATCCGTGGGCCGCGATACAAAAACCGCAA 29306 ||||| |||||||||||| |||||||||| ||||||||||| | || || || || Sbjct 1370179 GGCCGCGAAGATTTCAAAGTTTCTATTCACGACCCGTGGGCCGCTCTTCAGAAGCCACAG 1370238 Query 29307 AAGGGCGTGTCTGCGTGGAACGAGCCCTACAAAGGAAACTTCGGTCAGCTAATGGCGGCC 29366 ||||| ||||| | ||||| || || |||||||| ||||| |||||||| ||| | | Sbjct 1370239 AAGGGACTGTCTTCCTGGAATGAACCATACAAAGGCAACTTTGGTCAGCTGATGTCTCTC 1370298 Query 29367 AAGCTGGCCAATCCGCACCTCAAAATTCTGCCGTCCATCGGCGGCTGGACATTGTCCGAC 29426 || | |||| || | || |||||||| || |||||||| |||||||| | |||| Sbjct 1370299 AAACAAGCCAGGCCTGAACTTAAAATTCTACCTTCCATCGGAGGCTGGACTCTTGCCGAT 1370358 Query 29427 CCGTTCTATTTCATGCACGACGCGGAAAAACGGCGTGTGTTTGTGGACTCGGTCAGAGAA 29486 || |||| ||| | |||| || || | || || || || || || | ||| Sbjct 1370359 CCCTTCTTCTTCTTCACCGACAAAGAGAAGAGAGGTCGCTTCGTTGATTCTGTGAAAGAT 1370418 Query 29487 TTTCTGCAGGTGTGGAAGTTTTTTGACGGCGTGGACATAGACTGGGAGTTTCCGGGTGGC 29546 ||||| | |||||||| || ||||| || || || || ||||| || || || || Sbjct 1370419 TTTCTTCTAACCTGGAAGTTCTTCGACGGTGTTGATATCGATTGGGAATTCCCTGGCGGT 1370478 Query 29547 AAAGGCGCCAACCC-GACACTTGGCAACGGGGAGCGCGACGCCGACACGTATAACATT-- 29603 || || || ||||| ||| || || | | || |||| || | || | || || Sbjct 1370479 AAGGGAGCTAACCCTGAC-CTAGGAAGCCCTAAG---GACG--GAGATGT-TTACGTTGA 1370531 Query 29604 -TTACTAAAGGAATTGCGCGCAATGATGGACGA-GTTACAATTGCAAACGGGCAAAACGT 29661 ||| | ||||||||||| | |||| || |||| || | | | || || || | | Sbjct 1370532 ATTAATGAAGGAATTGCGTGAAATGTTGAACGACCTTTCTGAAG-AGACCGGTAAGAAAT 1370590 Query 29662 ACGAGTTGACAAGCGCAATCAGTTCCGGACATGACAAGATTGCTGTAGTTAAATACGACG 29721 ||||| |||| ||| || ||| | ||| || |||||| || || | ||| || Sbjct 1370591 ACGAGCTGACTTCCGCTATTAGTGCTGGATGGGATAAGATTCAAGTGGTCGATTACAGCG 1370650 Query 29722 CTGCGCAAAAGTTTCTCGATAAAATATTCCTCATGAGCTACGATTTTAAAGGCGCGTGGT 29781 || || || | | ||| | || ||||||||||| || |||||||||||||| |||| Sbjct 1370651 AGGCTCAGAAATACATGGATCACATTTTCCTCATGAGTTATGATTTTAAAGGCGCCTGGT 1370710 Query 29782 CAA---ACACCGATTTGGGCTACCAAACTACTCTCTACGCGCCGAGTTGGAACCCAAACG 29838 | | ||||| | || | || || | || ||||| || ||||||||| || | Sbjct 1370711 CTAATGACACC---CTCGGTCATCAGACACCGCTTTACGCTCCTGCTTGGAACCCCAAGG 1370767 Query 29839 AACTGTACAACACGGACCACGCCGTTA---AGTTGCTCACGAACCAGGGCGTGGACCCGC 29895 || || | ||| ||| | || | | ||||| | || ||||| |||| Sbjct 1370768 AAACTTATACCACTGACTTTGGTGTGAAATATTTGCTTGC---TCAAGGCGTCAACCCTA 1370824 Query 29896 GCAAAATTATTGTGGGCGTCGCCATGTACGGCCGCGGTTGGACAGGCGTGTCGGGTTATG 29955 || ||| | ||||| || || |||||||| || || ||||| || || || | Sbjct 1370825 AGAAGATTGTGGTGGGTGTAGCTATGTACGGACGAGGCTGGACCGGGGTTCACAACTACG 1370884 Query 29956 ACGGTGACAACTATTTTACGGGCACAGCTGCTGGGCCCGTGACCGGCACTTGGGAAGACG 30015 | | |||| || || |||| || |||| || || | || |||||| |||||| Sbjct 1370885 AAAATAACAATCCATTCACTGGCAACGCGACTGGACCTGTCAAAGGTACTTGGCAAGACG 1370944 Query 30016 GCGTTGTCGACTATCGCCAAATTGAAAACGAAAT 30049 | || || || ||| | |||| | ||| ||||| Sbjct 1370945 GTGTAGTTGATTATAGAGAAATAGCAAATGAAAT 1370978 >seq61578 Length=3623949 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| ||||||||||| || ||||| ||| ||||| || || Sbjct 3475975 ATGCAGATCTTCGTCAAGACTTTAACAGGAAAGACCATCACCCTCGAAGTTGAACCTTCA 3476034 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | || ||| || || || |||||||| | ||| || ||| Sbjct 3476035 GACACTATGGAGAACGTTAAAGCTAAAATCCAAGACAAAGAAGGTATCCCCCCAGACCAG 3476094 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || | ||||| | || || |||||| ||||||| | ||| | | || |||||| Sbjct 3476095 CAACGTCTTATCTTCGCCGGCAAACAGTTGGAGGATGGTCGTACACTCTCCGATTACAAC 3476154 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || ||||||||||| | ||| ||||| Sbjct 3476155 ATCCAGAAGGAGTCTACTCTTCACTTGGTG 3476184 >seq23042 Length=5275587 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 94241 TGGCCCATGCGATGAATACGGTCTTGCGCCTGCAGCTCGATCTGCGGGTTCCAGTGGGGC 94300 || |||| ||| | | ||||| ||||||||| |||| | ||||||||||||||| || Sbjct 2566043 TGCCCCACGCGGTACACGCGGTCCTGCGCCTGCTGCTCCAGCTGCGGGTTCCAGTGCGGG 2566102 Query 94301 TCCAGCATAATAATGTGATTGCCGCCGGTTAGGTTTAACCCCACGCCGCC 94350 ||||||| | | |||| || ||||| ||||| | |||||| ||||| Sbjct 2566103 TCCAGCAGCAGCAGGTGACTGGCGCCGCACAGGTTGAGCCCCACTCCGCC 2566152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398569628341843