Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq18715 255 5e-63 seq48925 147 2e-30 seq9460 143 2e-29 seq61578 134 1e-26 >seq18715 Length=1377716 Score = 255 bits (282), Expect = 5e-63 Identities = 641/972 (66%), Gaps = 3/972 (0%) Strand=Plus/Plus Query 45105 TGTCGCCGCTTATTTCGTTGAATGGGGAGTGTATGGGCGCAATTTTCCTATGAACCGCGT 45164 ||||| || || || ||||||||||| || || | || || || | | || || Sbjct 1369998 TGTCGGAGCGTACTTTGTTGAATGGGGTGTTTACCCAAGAAAATTCCCAGTCGATCGTGT 1370057 Query 45165 GCCAGTGCCGAACCTTACGCATTTGTTATACGGTTTTATTCCTATATGCGGTGGCGATGG 45224 || | || || || |||||| | || |||||||| |||||||| ||||| ||||| || Sbjct 1370058 ACCGATTCCTAATCTGACGCATCTTTTGTACGGTTTCATTCCTATTTGCGGAGGCGACGG 1370117 Query 45225 CATTAATGACAGTCTTAAAACGATTACAGGCAGTTTTGAAGCGTTGCAAAAATCGTGCGC 45284 ||| || |||||| | || ||| ||||||||| |||| | ||| ||| ||| Sbjct 1370118 CATCAACGACAGTTTAAAGGAGATCGAAGGCAGTTTCCAAGCTCTTCAACGATCATGCAG 1370177 Query 45285 CGGCCGCTCAGATTTCAAAGTGAGCATTCACGACCCATGGGCCGCTGTGCAAAAACCACA 45344 ||||||| |||||||||||| ||||||||||| ||||||||| | || || ||||| Sbjct 1370178 CGGCCGCGAAGATTTCAAAGTTTCTATTCACGACCCGTGGGCCGCTCTTCAGAAGCCACA 1370237 Query 45345 AAAAGGCGTTTCTGCTTGGAACGAACCGTATAAAGGCAATTTTGGACAAATCATGGCTGT 45404 || || | ||| | ||||| ||||| || |||||||| ||||| || | ||| || | Sbjct 1370238 GAAGGGACTGTCTTCCTGGAATGAACCATACAAAGGCAACTTTGGTCAGCTGATGTCTCT 1370297 Query 45405 AAAACGGGCAAATCCTCATTTAAAAGTGTTGCCATCGATTGGCGGCTGGACGCTGTCCGA 45464 |||| || | ||| | | ||| | | || || || || |||||||| || |||| Sbjct 1370298 CAAACAAGCCAGGCCTGAACTTAAAATTCTACCTTCCATCGGAGGCTGGACTCTTGCCGA 1370357 Query 45465 TCCGTTTTACCATTTGCACGATGCGGAGAAACGCGCTTTGTTTGTGGAATCCGTGCGCGA 45524 ||| || | | || ||| ||||| | | | || || || || ||| || Sbjct 1370358 TCCCTTCTTCTTCTTCACCGACAAAGAGAAGAGAGGTCGCTTCGTTGATTCTGTGAAAGA 1370417 Query 45525 ATTTTTAACTACGTGGAAATTTTTTGACGGAGTCGATATAGATTGGGAGTTTCCCGGCGG 45584 ||| | || ||||| || || ||||| || ||||| |||||||| || || ||||| Sbjct 1370418 TTTTCTTCTAACCTGGAAGTTCTTCGACGGTGTTGATATCGATTGGGAATTCCCTGGCGG 1370477 Query 45585 CAATGGCGCCAATCCATCGGTGGGCGATCCAGAACGCGACGGTCTCACTTATGTAGCACT 45644 || || || || || | || | || || ||||| ||| || | | | Sbjct 1370478 TAAGGGAGCTAACCCTGACCTAGG-AAGCCCTAA--GGACGGAGATGTTTACGTTGAATT 1370534 Query 45645 GCTGCGCGATTTGCGCGACATGCTCGATCAATTGGCGCACGAAACCGGTCGGCGCTACGA 45704 || || ||||| || ||| | | | | | | || |||||| | ||||| Sbjct 1370535 AATGAAGGAATTGCGTGAAATGTTGAACGACCTTTCTGAAGAGACCGGTAAGAAATACGA 1370594 Query 45705 ACTGACTACGGCTATAAGCGCCGGTGACGACAAAATCGCTTTGGTAGATTATCAAGACGC 45764 |||||| | ||||| || || || || || || |||| ||||| || || Sbjct 1370595 GCTGACTTCCGCTATTAGTGCTGGATGGGATAAGATTCAAGTGGTCGATTACAGCGAGGC 1370654 Query 45765 GCAAACTTATCTCGATCGAATCTTTTTAATGACGTATGATTTTAAAGGCGCTTGGTCGAA 45824 || | || | |||| || || | |||| ||||||||||||||||| ||||| || Sbjct 1370655 TCAGAAATACATGGATCACATTTTCCTCATGAGTTATGATTTTAAAGGCGCCTGGTCTAA 1370714 Query 45825 CTCGGATTTGGGCCATCAAACGGCCGTGTACGCGCCAGAATGGAATCGCGACGAGCGTTA 45884 | || ||||| || | | ||||| || | ||||| | | | || ||| Sbjct 1370715 TGACACCCTCGGTCATCAGACACCGCTTTACGCTCCTGCTTGGAACCCCAAGGAAACTTA 1370774 Query 45885 CACAGTCGACTACGCGGTGCACGTTTTGCTCGAAAAACGGGTAAAGCCTCAAAAAATCGT 45944 || |||| | ||| | |||||| | || | || || ||| | || || || Sbjct 1370775 TACCACTGACTTTGGTGTGAAATATTTGCTTGCTCAAGGCGTCAACCCTAAGAAGATTGT 1370834 Query 45945 GCTCGGCGTGGCAATGTACGGTCGCGGCTGGACCGGAGTAATTAACTATCAAGACGACAA 46004 | | || || || |||||||| || ||||||||||| || ||||| || | |||| Sbjct 1370835 GGTGGGTGTAGCTATGTACGGACGAGGCTGGACCGGGGTTCACAACTACGAAAATAACAA 1370894 Query 46005 CCCGTTTACCGGCATCGCAACCGGGCCCGTGTCCGGCACTTGGGAAGACGGTGTGATCGA 46064 || || || |||| ||| || || || || || |||||| |||||||||| | || Sbjct 1370895 TCCATTCACTGGCAACGCGACTGGACCTGTCAAAGGTACTTGGCAAGACGGTGTAGTTGA 1370954 Query 46065 TTATCGACAAAT 46076 |||| || |||| Sbjct 1370955 TTATAGAGAAAT 1370966 >seq48925 Length=1097090 Score = 147 bits (162), Expect = 2e-30 Identities = 163/215 (76%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || |||||| ||||| || ||||| || || ||||| || || | | || || ||| Sbjct 515389 CAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGACAACGTACGTCCATC 515330 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || | |||||||| || | ||||||||||||||||| || ||||| ||||||||||| Sbjct 515329 TTCTAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGAATGCCCTCTTTGTC 515270 Query 29694 TTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752 ||| |||||| | ||| ||| |||| | ||||||||| ||| || || | ||||| | Sbjct 515269 TTG-AATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCAACCTCTAACGTTATGG 515211 Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||| || || | |||||| || || ||||||||| Sbjct 515210 TTTTACCCGTGAGGGTTTTTACGAAGATCTGCATT 515176 >seq9460 Length=1391182 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 89749 ACAAAAACCTGAGCAGTTGGCGGATGCCGGttttttttACACGGGCCAAGGCGACAAGAC 89808 ||| ||||| ||| || ||||||| ||||| || || ||||| ||||| |||||||| || Sbjct 538947 ACAGAAACCAGAGGAGCTGGCGGAGGCCGGCTTCTTCTACACCGGCCACGGCGACAAAAC 539006 Query 89809 GATTTGTTTCTTTTGCAACGGGGGCCTTAAGGATTGGGAAGATGGCGATGAACCTTGGGA 89868 || || |||| ||| |||| ||||| ||||| ||||| | | ||| | || ||||| Sbjct 539007 GAAATGCTTCTACTGCGACGGCGGCCTCAAGGACTGGGAGAACGACGACGTCCCGTGGGA 539066 Query 89869 ACAACATGCGCGCTGGTTTGATAATTGCATCTATGTTCAACTAGTAAAAGGACGCGATTA 89928 || || ||||||||||| || ||| || ||||| || || ||||| ||||| || Sbjct 539067 GCAGCACGCGCGCTGGTTCGACCGCTGCGCTTACGTTCAGCTGGTGAAAGGCCGCGACTA 539126 Query 89929 CGTGCAAAATGTTATTTCGAACGCTTGCG 89957 ||| ||||| || || ||| | || |||| Sbjct 539127 CGTACAAAAAGTGATGTCGGAGGCCTGCG 539155 >seq61578 Length=3623949 Score = 134 bits (148), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAGA 29630 || || || ||||| || || || ||||| |||||||| || || | ||||| |||| Sbjct 3474426 CGGAGTACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGACAATG-TGCGTCC 3474368 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || |||||||| || | |||||||| ||||| || || || || ||||| || Sbjct 3474367 ATCTTCCAGCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCCTT 3474308 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || || ||| |||| | ||||| || |||| ||||| | || || Sbjct 3474307 GTCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCCGAGGGTTCAACTTCTAATGTGAT 3474248 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||||| ||||| || ||||| |||||||| Sbjct 3474247 GGTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 3474212 Score = 131 bits (144), Expect = 1e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAGA 29630 || || || ||||| || || || ||||| |||||||| || || | ||||| |||| Sbjct 3474654 CGGAGTACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGACAATG-TGCGTCC 3474596 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | |||||||| || | |||||||||||||| || || || || ||||| || Sbjct 3474595 ATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGGTCTGGGGGGATGCCCTCCTT 3474536 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || || ||| |||| | ||||| || |||| ||||| | || || Sbjct 3474535 GTCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCCGAGGGTTCAACTTCTAATGTGAT 3474476 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| ||||| || ||||| |||||||| Sbjct 3474475 GGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 3474440 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| || || || || |||||||| |||||||| || | | || ||| Sbjct 3475962 ACGGAGTACCAAGTGGAGTGTCGACTCTTTTTGGATGTTATAGTCTGATAGTGTACGACC 3475903 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | |||||||| || | || | | |||||| || || || ||||| ||||| Sbjct 3475902 ATCCTCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGGATACCTTCTTT 3475843 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||| ||| || | || | |||||| || |||| ||||| || || || Sbjct 3475842 GTCTTGGATTTTAGCTTTAACGTTCTCGATAGTGTCTGAGGGTTCAACTTCGAGGGTAAT 3475783 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| |||||||| ||||| || || || |||||||| Sbjct 3475782 AGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 3475747 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||| ||||| || || || || || ||||| ||||| | | || ||| Sbjct 3476190 ACGGAGCACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGAGAGTGTACGACC 3476131 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | |||||||| || | || | | |||||| || || || ||||| ||||| Sbjct 3476130 ATCCTCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGGATACCTTCTTT 3476071 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||| ||| || | || | |||||| ||| |||| ||||| || || || Sbjct 3476070 GTCTTGGATTTTAGCTTTAACGTTCTCCATAGTGTCTGAAGGTTCAACTTCGAGGGTGAT 3476011 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || ||||| || || || || |||||||| Sbjct 3476010 GGTCTTTCCTGTTAAAGTCTTGACGAAGATCTGCAT 3475975 Score = 113 bits (124), Expect = 3e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAGA 29630 || || || ||||| || || || ||||| |||||||| || || | ||||| |||| Sbjct 3474198 CGGAGTACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGACAATG-TGCGTCC 3474140 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || |||| ||| || | |||||||| ||||| | || || || ||||| || Sbjct 3474139 ATCTTCCAGCTGTTCGCCGGCGAAGATCAATCTCTGCTGGGCTGGGGGGATGCCCTCCTT 3474080 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || || ||| |||| | ||||| ||| | || || || | || || Sbjct 3474079 GTCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCCGAAGGCTCCACCTCTAAGGTGAT 3474020 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||||| || ||||| || || || ||||||||||| Sbjct 3474019 GGTCTTGCCCGTCAAGGTCTTCACGAAAATCTGCATTTT 3473981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384922545944367