Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq18715 269 3e-67 seq48925 149 6e-31 seq61578 104 2e-17 seq26895 86.0 6e-12 >seq18715 Length=1377716 Score = 269 bits (298), Expect = 3e-67 Identities = 683/1016 (67%), Gaps = 36/1016 (4%) Strand=Plus/Minus Query 18555 TAATCGACCACACCGTTTTCCCAAGTGCCGGCGACGGGACCGGTGGCCGTGCCCGCGAAT 18614 ||||| || ||||||| || |||||| || ||| || || || || |||| | |||| Sbjct 1370957 TAATCAACTACACCGTCTTGCCAAGTACCTTTGACAGGTCCAGTCGCGTTGCCAGTGAAT 1370898 Query 18615 GGATTATCACTATCGCTCTTT---ACCCCAGTCCAACCGCGCCCGTACATTGCTACACCC 18671 ||||| | | | ||| || ||||| ||||| || || |||||||| ||||||||| Sbjct 1370897 GGATTGTTATTTTCGTAGTTGTGAACCCCGGTCCAGCCTCGTCCGTACATAGCTACACCC 1370838 Query 18672 AGTGCAATTTTGCTTGTCGGT-ACGTGTTGCGCAAGCAACGCCTCTACGGCACGATCCGC 18730 | |||| || ||| | | ||| ||| |||||||| | || || || | Sbjct 1370837 ACCACAATCTT-CTTAGGGTTGACGCCTTGAGCAAGCAAATATTTCACACCAAAGTCAGT 1370779 Query 18731 GCAATAAGGTTCGTCGGGTTTCCATGCAGGTGCAAACAAAGCGGTTT--GATGTCCTAAA 18788 | ||||| ||| | ||| ||||| ||||| || | ||||||| | |||| || | Sbjct 1370778 GGTATAAGTTTCCTTGGGGTTCCAAGCAGGAGCGTA--AAGCGGTGTCTGATGACCGAGG 1370721 Query 18789 TCCGTCAT-AGACCAGGCTCCTTTAAAATCGTACGACATTAAAAATATGGTGTCGAGGTA 18847 ||||| ||||||||| ||||||||||| || ||| | || ||| || | ||| Sbjct 1370720 GT-GTCATTAGACCAGGCGCCTTTAAAATCATAACTCATGAGGAAAATGTGATCCATGTA 1370662 Query 18848 TTTTTGCGCTTCAGTGTAATCGACCACAGCAATCTTATCGTCGCCCGCGCTTATCGCACT 18907 ||| || || || ||||||||||||| ||||||||| || || || || || Sbjct 1370661 TTTCTGAGCCTCGCTGTAATCGACCACTTGAATCTTATCCCATCCAGCACTAATAGCGGA 1370602 Query 18908 CGTCAAC----ATATAGTAACGATTGTGATGTACGCCTAGGGCGTCGAGCATGCCGCGAA 18963 |||| | || | || || | | | | ||| ||| | ||| | || | Sbjct 1370601 AGTCAGCTCGTATTTCTTACCGGTC----TCTTCAGAAAGGTCGTTCAACATTTCACGCA 1370546 Query 18964 GTTCACGCAGCAGG--ATCGTGTACGTGGCCCGATCGCGTTCGGCGTCGCCGACGTTGGG 19021 ||| || | | ||| || | || || | | ||| || | | || || Sbjct 1370545 ATTCCTTCATTAATTCAACGTAAACATCTCCG--TC-CTTAGGGCTTC--CTAGGTCAGG 1370491 Query 19022 GTTAGCGCCATTGCCGCCTGGAAACTCCCAATCAATATCGACGCCATCGAAGAATTTCCA 19081 |||||| || || ||||| || || |||||||| ||||| || || |||||||| ||||| Sbjct 1370490 GTTAGCTCCCTTACCGCCAGGGAATTCCCAATCGATATCAACACCGTCGAAGAACTTCCA 1370431 Query 19082 CGTTTCTAGATACTCTTGGACTGAATCGATAAA-CGTCTGCCGTACGATCTTGTCG-TGC 19139 ||| ||| | |||| || ||||| | || || | | | | | |||||| || Sbjct 1370430 GGTTAGAAGAAAATCTTTCACAGAATCAACGAAGCGACCTCTCTTCTCT-TTGTCGGTGA 1370372 Query 19140 ATATGGTAAAATGGGTCCGAAAGTGTCCAGCCCCCGATCGAAGGTAGCACTTTTAGATGA 19199 | | | | || || || | ||| |||||||| ||||| |||||||| | ||| || | | Sbjct 1370371 AGAAGA-AGAAGGGATCGGCAAGAGTCCAGCCTCCGATGGAAGGTAGAATTTTAAGTTCA 1370313 Query 19200 GGGTTCGCCAATTTGGCTGCCATAAGTTGGCCAAAGTTGCCTTTGTACGGTTCGTTCCAT 19259 || | || |||| | ||| || || ||||||||||||||||| ||||| ||||| Sbjct 1370312 GGCCTGGCTTGTTTGAGAGACATCAGCTGACCAAAGTTGCCTTTGTATGGTTCATTCCA- 1370254 Query 19260 GCGCTGACA--CCTTTTTGGGGTTTCTGTATGGCCGCCCAAGGATCGTGAATGGCCACTT 19317 | |||| || || || || ||||| | || ||||| || |||||||| | |||| Sbjct 1370253 -GGAAGACAGTCCCTTCTGTGGCTTCTGAAGAGCGGCCCACGGGTCGTGAATAGAAACTT 1370195 Query 19318 TGAAGTCGGCACGACCGGCACACGAACGTTGCAACGCTTCGAAACTGCCCGGGACAGTTT 19377 |||| || | || ||| || || ||||| | |||| ||||||||| || | Sbjct 1370194 TGAAATCTTCGCGGCCGCTGCATGATCGTTGAAGAGCTTGGAAACTGCCTTCGATCTCCT 1370135 Query 19378 TGAGGGCATCATTGATGCCGTCGCCACCGCACATGGGCACGAAACCGTACAACAAATGCG 19437 | | || |||||||||||||| ||||| || || | |||||||||||| | ||||| Sbjct 1370134 TTAAACTGTCGTTGATGCCGTCGCCTCCGCAAATAGGAATGAAACCGTACAAAAGATGCG 1370075 Query 19438 ACAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGTCGCGGATACACACCCCATTCGA 19497 || || || | || || |||||| || || | || || || ||||||||||| | Sbjct 1370074 TCAGATTAGGAATCGGTACACGATCGACTGGGAATTTTCTTGGGTAAACACCCCATTCAA 1370015 Query 19498 CAAAGTATGCACCTATAATCTTGTCC-GAGCGCTTTTCGAACCGTTTATTGTTTTC 19552 ||||||| || || | || ||| ||| || | || || ||| | ||||| || || Sbjct 1370014 CAAAGTACGCTCCGACAA-CTTTTCCTGAACTCTGTTTGAATGGCTTATTCTTCTC 1369960 >seq48925 Length=1097090 Score = 149 bits (164), Expect = 6e-31 Identities = 609/944 (65%), Gaps = 37/944 (4%) Strand=Plus/Plus Query 150720 GGTTGACAACTTGAAATTCGCCCGACAAAACACGTC-TCAAAAACAAATTACTGTGAAAC 150778 |||| ||||| || ||||| || ||||||||||||| | || || |||| ||| Sbjct 840171 GGTTAACAACCTGGAATTCTCCAGACAAAACACGTCTTTGGTAAATGTTTGATGTG-AAC 840229 Query 150779 GGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCC 150838 |||||||| ||||| || || | |||||||| || | || || ||||| || Sbjct 840230 GGTTCAAAGGACTCATTATTTCCTAAGATTTGTGCTGTAGACGCTGTGGGCATTGGAGCT 840289 Query 150839 ACAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTAT-TTTCAACTGTGACCAGTC 150897 | || | |||||| || | ||| | ||| | | ||||| ||||| ||||||| Sbjct 840290 AATAGAAGTGAATTGCGGAGTCCAT-GTTTGGCAATTTTATCTTTCAGAATAGACCAGTT 840348 Query 150898 CCATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTT 150957 ||| | ||| || ||| ||||| || |||||||| || |||| ||| || Sbjct 840349 CCAGAGATCAGTTGGAGTTTTATCCCACATGTCATATTGCAAGATGCCTTGGCTTGCAGG 840408 Query 150958 GCTACCGGCAAACGTGCTATAAGGCTCACTAACAGAT---GCCAGTTCGTAACTGGCCTC 151014 || || || | || |||||| ||| || | | |||||||| ||||||| || Sbjct 840409 ACTTCCTTCATATGTACTATAA-ACTCCCT--CTTTTTGCGCCAGTTCACAACTGGCTTC 840465 Query 151015 GAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCT 151074 | || | | ||| | ||||| ||||||| || | | || || | || || Sbjct 840466 TAATGCTCCGTAATATATGGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCTTCTTCACT 840525 Query 151075 CACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCTATGCCGAT 151134 | || || ||||||| | ||||||| ||| || || ||||| | || || || || Sbjct 840526 TTCATATGGAATGCGCATTAGTACAAATGTATCAGCTAACCCTTGCACTCCAATACCTAT 840585 Query 151135 GGGACGATGGCGCATATTAGAtttttttGCAGTTTCA---ATAGGGTAGAAATTGCGATC 151191 || | || ||||| ||||| |||||||| |||| | ||||| ||||| ||| Sbjct 840586 AGGTCTGTGACGCATGTTAGAATTTTTTGC---TTCAGGCACTGGGTAAAAATTAACATC 840642 Query 151192 AATAATTTTATTCAAACTAT---TCACTACATGTTTGACCACAGTGTGCAATAGTTGAAA 151248 |||||||||||| | | | | | || | | |||| | | ||| | ||| Sbjct 840643 AATAATTTTATTAAGGTTCTGTGTGATTATCTTTGTGACTTC---TTTCAACTTTATAAA 840699 Query 151249 ATCAAAAG---TATCATTATTGATATATTTATTGACGGCAATCGACGCTAGATTACATAC 151305 | | | |||| | ||| | | | |||| | ||||| || |||| |||||| || Sbjct 840700 GTTGTATGTTTTATCTTCATTAACAAACCTATTCAAAGCAATTGAAGCTAAATTACAAAC 840759 Query 151306 GGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTAT 151365 ||| ||| || | | |||| || ||||| | |||||||| ||||||||||| Sbjct 840760 AGCAACTTCATCTGCTGAAGTGTATTCCACAATTTCGGTGCACAAATTACTGCATTTTAT 840819 Query 151366 CAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGG 151425 || ||| ||||||| ||||| | || || | || || || | |||||| || Sbjct 840820 GGTGCCAAGATTTTTTTGATTACTTTTTCTATTACATGAATCTTTATACAGCATGTATGG 840879 Query 151426 TGTGCCGGTTTCGGCTTGAATTTCTATAAT---GTTTCGCATTAATGTAACCGCGGGCAT 151482 |||||| ||||| |||| |||||| || || | || | | | | | ||| | Sbjct 840880 TGTGCCCGTTTCCACTTGTGCTTCTATTATTGCTTTCCACAGTTCT-TGAGCTCGG--AC 840936 Query 151483 TTGCTCGCGAAACTGGCCTTTATCC---TCATAATGTTTGTACCAGTATTCAAAGTCATC 151539 ||||| ||| | ||| ||| ||||| | || ||| | |||||| || || Sbjct 840937 TTGCTTAACAAA---TCTTTTTTCCTGTTCATATTTTTCATACAATGCTTCAAATTCTTC 840993 Query 151540 ACCATACGTATCGTTGAGCTTAGGACACTCGTTAGGACACATTAATGACCATATACCGTT 151599 || | ||| || || || || | ||||||||||| ||| || | | Sbjct 840994 TCCCCAACAATCAGCAAGACCGGGGCAATCATGAGGACACATTAGACTCCACATTTCATC 841053 Query 151600 TTCTTCAACGCGTTTCATAAATATATCCGGAACCCATAATGCGT 151643 || ||| || ||||||||||||| ||| || | |||||| |||| Sbjct 841054 TTTTTCTACACGTTTCATAAATAAATCTGGGATCCATAAGGCGT 841097 Score = 111 bits (122), Expect = 2e-19 Identities = 170/240 (71%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 137179 ACATGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAA 137238 |||| |||||||| | | ||| || || |||| ||| ||||| || || |||||||| Sbjct 515409 ACATTACCTCCTCGAAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAG 515350 Query 137239 TCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATC 137297 ||| || || | || | ||||| | ||||| || || |||||| | ||||||||| Sbjct 515349 TCGGACAACGTACGTCCA-TCTTCTAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATC 515291 Query 137298 GGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGG 137357 || || ||||| |||||||| |||||| ||||| | ||| | ||||| | || Sbjct 515290 TGGTGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGC 515231 Query 137358 TTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCTTA 137417 ||| || || | || | || || || || | ||||||||||| || ||||| | ||| Sbjct 515230 TTCAACCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCATTGTTTA 515171 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 150405 TGCGAAAATAGTACATGCCGGTTTTGAGGCCGCGCTTCCAACCGTACATGTGCACCGACG 150464 |||| ||||| ||||| || ||||| || || ||||| |||| | ||| | ||||| Sbjct 839865 TGCGTAAATAATACATTCCTGTTTTCAGACCCATTTTCCATGCGTAAAAGTGAATCGACG 839924 Query 150465 CCATTTTAGGCAAAGTAGGGTTTGCCATGTACACGTTGAACGATTGACTTTGATCGATAA 150524 || ||| || |||| | |||| | | ||| |||||||||||||| || |||| Sbjct 839925 TCAATTTTCCATAATTAGGTTCAGCCACATGAATGTTAAACGATTGACTTTGGTCTATAA 839984 Query 150525 ATGCTCCCCTGTCTGCTGCCATTTCAAT 150552 ||||||| ||||| || ||||||| ||| Sbjct 839985 ATGCTCCTCTGTCAGCGGCCATTTTAAT 840012 >seq61578 Length=3623949 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || || || | ||| || |||||||| ||||| || || | Sbjct 3475973 CCACCACGGAGACGGAGTACCAAGTGGAGTGTCGACTCTTTTTGGATGTTATAGTC--TG 3475916 Query 137245 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 || ||| ||| || || | ||||| || || |||| ||||||||||| || || | Sbjct 3475915 ATAGTGTACGACCATCCTCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGG 3475856 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | || ||||||||||| ||||| ||| | | || | ||||||| |||||| | Sbjct 3475855 GGATACCTTCTTTGTCTTGGATTTTAGCTTTAACGTTCTCGATAGTGTCTGAGGGTTCAA 3475796 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||| | || | |||||||| ||||| || || ||||| || |||||| Sbjct 3475795 CTTCGAGGGTAATAGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATA 3475746 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||| | || || |||| ||||| || || || |||||||||||| Sbjct 3476202 GCCGCCGCGAAGACGGAGCACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGA 3476143 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | ||| | || || | ||||| || || |||| ||||||||||| || || || Sbjct 3476142 GAGTGTACGACCATCCTCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGG 3476083 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||||||||| ||||| ||| | | |||| ||||||| ||||| || Sbjct 3476082 GATACCTTCTTTGTCTTGGATTTTAGCTTTAACGTTCTCCATAGTGTCTGAAGGTTCAAC 3476023 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||| | || | ||||| || || || || || ||||| || |||||| Sbjct 3476022 TTCGAGGGTGATGGTCTTTCCTGTTAAAGTCTTGACGAAGATCTGCATA 3475974 >seq26895 Length=1000185 Score = 86.0 bits (94), Expect = 6e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 54800 GCTTCAATGTTGCCCAAATCACCGACGTGTCTCACCGCAGCGTTGGGCGCACCATGATTG 54859 |||||||||||||| | || |||||||| | ||| || |||||||| || ||||| | Sbjct 288919 GCTTCAATGTTGCCGAGGTCGCCGACGTGACGCACAGCGGCGTTGGGGGCGCCATG-CTC 288861 Query 54860 CTACCCG-TCGGATTAAAATGTTCTCCGGCCGAAGTACAGCCGTTGCTGATGTCGCCAAA 54918 || | | | || ||||| || | || || || || || || || || |||| ||||| Sbjct 288860 CTGCTTGTTGGGGTTAAAGTGGGCACCTGCAGATGTGCAACCATTTGTGTTGTCACCAAA 288801 Query 54919 TTCGTGTACGTGAAAACCGTG 54939 ||||| || ||||||||||| Sbjct 288800 CTCGTGCACATGAAAACCGTG 288780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488158129628400