Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq18715 262 4e-65 seq9460 136 4e-27 seq26895 131 2e-25 seq61578 114 1e-20 seq51658 84.2 2e-11 seq48925 84.2 2e-11 >seq18715 Length=1377716 Score = 262 bits (290), Expect = 4e-65 Identities = 775/1189 (65%), Gaps = 17/1189 (1%) Strand=Plus/Plus Query 24800 GCGTACTTTGTCGAGTGGGGTGTGTACCCGCGCCAGTTTCCCGTCGACAAGGTGCCCGCG 24859 ||||||||||| || |||||||| ||||| | | || || ||||| || || Sbjct 1370005 GCGTACTTTGTTGAATGGGGTGTTTACCCAAGAAAATTCCCAGTCGATCGTGTACCGATT 1370064 Query 24860 CCCAACCTCTCGCACTTGCTCTACGGCTTTGTGCCCATCTGCGGCGGCGCGGGCATCAAC 24919 || || || |||| | | ||||| || | || || ||||| |||| ||||||||| Sbjct 1370065 CCTAATCTGACGCATCTTTTGTACGGTTTCATTCCTATTTGCGGAGGCGACGGCATCAAC 1370124 Query 24920 GATGCGCTAAAAACTGTGCCGGGCAGCTTCGAGGCGCTGCAACGATCGTGCGCCGGCCGC 24979 || |||| | ||||| ||| | || || |||||||| ||| ||||||| Sbjct 1370125 GACAGTTTAAAGGAGATCGAAGGCAGTTTCCAAGCTCTTCAACGATCATGCAGCGGCCGC 1370184 Query 24980 GCCGACTTCAAGGTGGCCATCCACGATCCGTGGGCGGCCATACAGAAACCGCAGAAAGGC 25039 | || ||||| || | || ||||| |||||||| || | ||||| || ||||| || Sbjct 1370185 GAAGATTTCAAAGTTTCTATTCACGACCCGTGGGCCGCTCTTCAGAAGCCACAGAAGGGA 1370244 Query 25040 GTGTCCGCGTGGAACGAGCCGTACAAGGGCAACTTTGGCCAGCTGATGGCGCTGAAGCGC 25099 |||| | ||||| || || ||||| ||||||||||| ||||||||| | || || | Sbjct 1370245 CTGTCTTCCTGGAATGAACCATACAAAGGCAACTTTGGTCAGCTGATGTCTCTCAAACAA 1370304 Query 25100 GCCTACCCGCACCTCAAAGTGCTGCCCTCGATCGGCGGCTGGACGCTGTCCGACCCGTTC 25159 ||| || | || ||| | || || || ||||| |||||||| || |||| || ||| Sbjct 1370305 GCCAGGCCTGAACTTAAAATTCTACCTTCCATCGGAGGCTGGACTCTTGCCGATCCCTTC 1370364 Query 25160 TTCCACATGCACGACAAGGCGGCGCGCCAGACG-TTTATCGACTCGGTGCAAGAGTACCT 25218 ||| | | |||||| | | | | | || || | || || ||| |||| | || Sbjct 1370365 TTCTTCTTCACCGACAAAGAGAAGAG-AGGTCGCTTCGTTGATTCTGTGAAAGATTTTCT 1370423 Query 25219 CGTCACCTGGAAGTTCTTTGACGGCGTCGACCTCGATTGGGAGTTTCCCGGCGGCAAGGG 25278 | |||||||||||||| ||||| || || |||||||||| || || ||||| ||||| Sbjct 1370424 TCTAACCTGGAAGTTCTTCGACGGTGTTGATATCGATTGGGAATTCCCTGGCGGTAAGGG 1370483 Query 25279 CGCCAACCCGGACGTGGGCAACGCCGAGCGCGATCGCGCCACCTACACTACCCTGTTGGC 25338 || ||||| ||| | || | | | || || | | ||| | | || Sbjct 1370484 AGCTAACCCTGACCTAGGAAGCCCTAAG---GACGGAGATGTTTACGTTGAATTAATGAA 1370540 Query 25339 GGAGCTGCGCGCGATGCTCGACGCGCTCGGTGCCCACCAAAACCG---CCACTACCTGCT 25395 ||| |||| | ||| | ||| || | | | | | | | | ||| ||| Sbjct 1370541 GGAATTGCGTGAAATGTTGAACGACCT---TTCTGAAGAGACCGGTAAGAAATACGAGCT 1370597 Query 25396 CACTAGCGCGATTAGCGCGGGCAACGACAAGATCGCCGTCGTCGACTACACTGAGGCGCA 25455 ||| ||| ||||| || || || ||||| || ||||| |||| ||||| || Sbjct 1370598 GACTTCCGCTATTAGTGCTGGATGGGATAAGATTCAAGTGGTCGATTACAGCGAGGCTCA 1370657 Query 25456 AAAGTATCTCGATCTGATATTCCTCATGTCGTACGATTTTAAGGGCGGCTGGTCGCTCAA 25515 || || | |||| || ||||||||| || |||||||| |||| |||||| | Sbjct 1370658 GAAATACATGGATCACATTTTCCTCATGAGTTATGATTTTAAAGGCGCCTGGTCTAATGA 1370717 Query 25516 CGAGCTCGGTCATCAGACGGCGCTTTACGCGCCCCCGTGGCGGCCCGACGAACCGTACTG 25575 | |||||||||||||| |||||||||| || | ||| ||| | ||| | || Sbjct 1370718 CACCCTCGGTCATCAGACACCGCTTTACGCTCCTGCTTGGAACCCCAAGGAAACTTATAC 1370777 Query 25576 CGCGGACCGCGCGGTCGAGGCGCTGCTCGCGCAACACGTGCCCAAGAACAAGATTGTGCT 25635 | | ||| | || | |||| || ||| ||| | || ||||||||| | Sbjct 1370778 CACTGACTTTGGTGTGAAATATTTGCTTGCTCAAGGCGTCAACCCTAAGAAGATTGTGGT 1370837 Query 25636 GGGCGTTGCCATGTACGGCCGCGGCTGGACGGGCGTAGCGAGCGACGACAGCGACAATCC 25695 ||| || || |||||||| || |||||||| || || | | |||| | ||||||| Sbjct 1370838 GGGTGTAGCTATGTACGGACGAGGCTGGACCGGGGTTCACAACTACGAAAATAACAATCC 1370897 Query 25696 ATTCTTGGGCACCGCCACCGGTCCCGTCCCCGGCACCTGGGAGGACGGCGTCGTCGACTA 25755 |||| |||| ||| || || || ||| || || ||| | ||||| || || || || Sbjct 1370898 ATTCACTGGCAACGCGACTGGACCTGTCAAAGGTACTTGGCAAGACGGTGTAGTTGATTA 1370957 Query 25756 TCGACAGATTGCTCACAACCTCAC-----GC-AGTACACGTACGCGTACGACGACGTTGC 25809 | || | || || | | || | || | | || | ||||| ||||||| Sbjct 1370958 TAGAGAAATAGCAAATGAAATCGCTATGGGCAAATGGGAGTTCCATTACGATAACGTTGC 1371017 Query 25810 CAAGGCGGCGTACATTTATCGCGCATCCGACGGCAACTTGATTAGCTACGACGACGCTGC 25869 | || | || | | || |||| ||| || | || | ||||| | | Sbjct 1371018 TGAAGCTCCTTATGTGTTCCGGCCATCGACCGGTGACCTAATAACGTACGATAATCCCCG 1371077 Query 25870 CTCGGTCACCGCCAAGGCCAAATATGTATTGGACCACGAGCTGGCCGGTCTGTTTGCCTG 25929 ||| | || || | ||| |||||| || | |||||| |||| |||| || || Sbjct 1371078 ATCGACTATTGCGAAAGGCAAGTATGTAAGAAACAATAAGCTGGGCGGTTTGTTCGCGTG 1371137 Query 25930 GGAAATTGACGCCGACAACGGTGACCTGCTCAACGCCATGAACAAGGGT 25978 ||| ||||| || ||||| ||||| || | ||||||||||||| |||| Sbjct 1371138 GGAGATTGATGCAGACAATGGTGAACTATTAAACGCCATGAACATGGGT 1371186 >seq9460 Length=1391182 Score = 136 bits (150), Expect = 4e-27 Identities = 120/150 (80%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 50029 AAACGGACACTGCGGCGCCCAGCGCGCGTGGTCGGTGGCCACGTCGTCGCCCTCCATCCA 50088 ||| || |||||||| ||||| ||| |||||| | || |||||||||||||| ||| Sbjct 538761 AAAGGGGCACTGCGGGGCCCACCGCTGGTGGTCCTTAGCGGGGTCGTCGCCCTCCACCCA 538702 Query 50089 CCGCATGATTTCTACCTTGCAGAATGCGCAGCGCACGGTGTCGCCGTTGCCAAAATAGTA 50148 ||||||||||| || || || || |||||||| || ||||||| ||| | ||||| Sbjct 538701 GCGCATGATTTCGACTTTACAAAAGGCGCAGCGGACCTCGTCGCCGCGGCCGAGGTAGTA 538642 Query 50149 GAATCCGTTGCGCGCCAGCTGCTCGGGCGA 50178 ||| ||||||||||| |||||||||||||| Sbjct 538641 GAAGCCGTTGCGCGCTAGCTGCTCGGGCGA 538612 >seq26895 Length=1000185 Score = 131 bits (144), Expect = 2e-25 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 116473 CACGGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCCGGCGAA 116532 ||||| || || |||||||||||||| |||| || || || ||||| || || || | Sbjct 288780 CACGGTTTTCATGTGCACGAGTTTGGTGACAACACAAATGGTTGCACATCTGCAGGTGCC 288839 Query 116533 CACTTCAACCCCACCGGCCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTCACGTCGGT 116592 ||||| ||||||| | ||||| || ||||| ||||||||||| || ||||||||||| Sbjct 288840 CACTTTAACCCCAACAAGCAGGAGCATGGCGCCCCCAACGCCGCTGTGCGTCACGTCGGC 288899 Query 116593 GACCTGGGCAACATTGAGGCCA 116614 ||||| ||||||||||| |||| Sbjct 288900 GACCTCGGCAACATTGAAGCCA 288921 >seq61578 Length=3623949 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||| ||||||||||| || ||||| || || ||| | | | || || || Sbjct 3474189 AAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGACAATGTGCGTCCA-TCTTCCAG 3474131 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| | ||| ||| | || | | ||||||| | || |||||||| |||||||| ||| Sbjct 3474130 CTGTTCGCCGGCGAAGATCAATCTCTGCTGGGCTGGGGGGATGCCCTCCTTGTCTTGGAT 3474071 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | |||| ||||| | |||||||| || | ||||| ||| ||||| Sbjct 3474070 CTTGGCCTTAACATTTTCAATTGTGTCCGAAGGCTCCACCTCTAAGGTGATGGTCTTGCC 3474011 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || |||||||||||||| Sbjct 3474010 CGTCAAGGTCTTCACGAAAATCTGCAT 3473984 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||| ||||||||||| || ||||| || || ||| | | | || || || Sbjct 3474417 AAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGACAATGTGCGTCCA-TCTTCCAG 3474359 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| ||||| ||| | || | | ||||||||| || |||||||| |||||||| ||| Sbjct 3474358 CTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGAT 3474299 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | |||| ||||| | ||| || || || | |||| ||||||||| Sbjct 3474298 CTTGGCCTTAACATTTTCAATTGTGTCCGAGGGTTCAACTTCTAATGTGATGGTTTTGCC 3474239 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || || |||||||| Sbjct 3474238 AGTCAAGGTCTTGACAAAGATCTGCAT 3474212 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||| ||||||||||| || ||||| || || ||| | | | || || | Sbjct 3474645 AAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGACAATGTGCGTCCA-TCTTCCAA 3474587 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| ||||| ||| | || | | |||||||| || |||||||| |||||||| ||| Sbjct 3474586 CTGTTTGCCGGCGAAGATCAATCTTTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGAT 3474527 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | |||| ||||| | ||| || || || | |||| ||| ||||| Sbjct 3474526 CTTGGCCTTAACATTTTCAATTGTGTCCGAGGGTTCAACTTCTAATGTGATGGTCTTGCC 3474467 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || || |||||||| Sbjct 3474466 AGTCAAGGTCTTGACAAAGATCTGCAT 3474440 >seq51658 Length=184250 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 133535 CCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAAC 133594 || ||||||||| |||||||| || ||||| || ||||| |||| | || | Sbjct 30423 CCTCTGCTGGTCCGGAGGGATTCCCTCCTTATCTTGAATCTTGGCTTTGACATTTTCGAT 30364 Query 133595 CGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAAT 133654 ||||| | ||| || || |||| ||||| |||||| || || || ||||| |||||||| Sbjct 30363 GGTGTCCGAGGGTTCAACCTCGAGGGTGATGGTTTTCCCCGTGAGGGTTTTCACGAAAAT 30304 Query 133655 CTGCAT 133660 |||||| Sbjct 30303 CTGCAT 30298 >seq48925 Length=1097090 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 148815 TTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACG 148874 |||| || || || |||| ||| || || || ||||| | | |||| || || Sbjct 840731 TTCAAAGCAATTGAAGCTAAATTACAAACAGCAACTTCATCTGCTGAAGTGTATTCCACA 840790 Query 148875 ATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTG 148934 || |||| ||||| ||| |||||||| || ||| | || |||||||| || || || Sbjct 840791 ATTTCGGTGCACAAATTACTGCATTTTATGGTGCCAAGATTTTTTTGATTACTTTTTCTA 840850 Query 148935 TTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT 148993 || || | || || ||||||||||| ||| ||| |||||||| || | ||| | ||| Sbjct 840851 TTACATGAATCTTTATACAGCATGTATGGTGTGCCCGTTTCCACTTGTGCTTCTATTAT 840909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483038976123880