Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq48925 279 1e-69 seq23474 98.7 2e-15 >seq48925 Length=1097090 Score = 279 bits (308), Expect = 1e-69 Identities = 544/798 (68%), Gaps = 7/798 (1%) Strand=Plus/Minus Query 110363 TGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAA 110422 |||| | ||||| || ||| | | || || ||||||| || || || | || ||| | Sbjct 841594 TGAAAGACCTCAGCATATGCTGATGCGAGTCTCGATTGGAATCCACGGTGAAGACATTGA 841535 Query 110423 AGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTAC 110482 | | |||||| ||| || | ||| | |||| | || |||||| | ||| || Sbjct 841534 TTCAGCCATTGAAACTTACAATTTGTTATCTGAAAAATATTTTACTCATGCCAGTCCCAC 841475 Query 110483 CCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAA 110542 |||| |||| |||| || |||||| |||||||||| ||| ||| || || Sbjct 841474 ATTATTCTCAGCAGCAACTCCAAGACCACAATTATCTTCTTGCTTCCTTATAGCTATGAA 841415 Query 110543 CGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAA 110602 |||||| ||||| ||||| ||||| | || ||| || ||| | || || |||| Sbjct 841414 AGATGATAGCATTGAGGGTATATATGACACACTAAAACAATGTGCCTTAATCTC-AAAAT 841356 Query 110603 CT-CTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAA 110661 || |||| || || || |||| |||||| || | ||||||| | | || || Sbjct 841355 CTGCTGGTGGTATAGGCCTTCATGTTCATTGCATCAGGGCAAAAGGTACCTACATAGCTG 841296 Query 110662 CAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAA 110721 | || || | ||| | ||| || || |||||||| ||||| | ||| | || || | Sbjct 841295 GTACTAATGGAGTTTCCAATGGCCTCGTGCCAATGTTGAGAGTGTACAATAATACAGCCA 841236 Query 110722 AATATGTGAATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATCTATCTCGAACCTT 110778 ||||| | ||||| || || | || || |||||||||| || || ||||||| Sbjct 841235 GGTATGTCGACCAAGGAGGCAATAAACGACCGGGAGCATTTGCTATTTACCTTGAACCTT 841176 Query 110779 GGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAA 110838 |||| || ||| | ||||| || ||||| || || ||| || ||||| Sbjct 841175 GGCACTCTGATGTTTTTGAGTTTTTAGATCTGAAAAAGAATACTGGCAAAGAAGAGGTCC 841116 Query 110839 GAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAG 110898 |||| | || |||||||| || | ||||| |||||||||| ||||||||||| || Sbjct 841115 GAGCTAGAGAATTATTTTACGCCTTATGGATCCCAGATTTATTTATGAAACGTGTAGAAA 841056 Query 110899 AAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATG 110958 || ||| |||||| ||| |||||||||||| || || ||||| ||||| | | Sbjct 841055 AAGATGAAATGTGGAGTCTAATGTGTCCTCATGATTGCCCCGGTCTTGCTGATTGTTGGG 840996 Query 110959 GAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAA 111018 || |||| ||||||| | || |||||||||||| | ||| | ||| || ||| Sbjct 840995 GAGAAGAATTTGAAGCATTGTATGAAAAATATGAACAGGAAAAAAGATTTGTTAAGCAAG 840936 Query 111019 TTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTT 111078 | | |||||||||||| ||| ||| | ||| ||||||| ||||| || || || | Sbjct 840935 TCCGAGCTCAAGAACTGTGGAAAGCAATAATAGAAGCACAAGTGGAAACGGGCACACCAT 840876 Query 111079 ATATTTTGTATAAAGAT-CATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATT 111137 | || ||||||||||| ||| | ||| | ||| |||||||| ||| | || || || Sbjct 840875 ACATGCTGTATAAAGATTCATGT-AATAGAAAAAGTAATCAAAAAAATCTTGGCACCATA 840817 Query 111138 AAGTCTAGTAATTTGTGC 111155 || | |||||||||||| Sbjct 840816 AAATGCAGTAATTTGTGC 840799 >seq23474 Length=2349451 Score = 98.7 bits (108), Expect = 2e-15 Identities = 133/184 (72%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 305307 GACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGT 305366 ||||||| | || |||||| |||| | || || |||| || | || || || ||| Sbjct 1586144 GACATTTAAGAGATGATGATTTGGTTATATTTAACCGGCAGCCTACCCTCCACAAGATGA 1586203 Query 305367 CTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTG 305426 |||||||| || | || ||||| || || | | ||||| || | ||| ||||| Sbjct 1586204 GTATGATGGGACACAGGGTGAAAGTGCTACCTTGGTCAACATTCCGTATGAATTTAAGT- 1586262 Query 305427 CTTGTACG---CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTC 305483 |||||| ||||| ||||| |||||||||||||||||||||||| | ||||| || | Sbjct 1586263 --TGTACGTCTCCTTACAATGCTGATTTTGATGGAGATGAAATGAATTTACATGTTCCGC 1586320 Query 305484 AATC 305487 | || Sbjct 1586321 AGTC 1586324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185851976013707