Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq61578 125 5e-24 seq48925 109 4e-19 >seq61578 Length=3623949 Score = 125 bits (138), Expect = 5e-24 Identities = 160/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | |||||| || ||||| ||| || || |||||||||||||||||||| || | Sbjct 3476190 ACGGAGCACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGAGAGTGTACGACC 3476131 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || ||||| ||||| ||||| || || | ||| ||||| ||| | || | ||||||||| Sbjct 3476130 ATCCTCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGGATACCTTCTTT 3476071 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGT-CACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| ||||| | || ||| | | || ||||| | ||| || || | |||| Sbjct 3476070 GTCTTGGATTTT-AGCTTTAACGTTCTCCATAGTGTCTGAAGGTTCAACTTCGAGGGTGA 3476012 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || |||||||| || || || |||||||||||| Sbjct 3476011 TGGTCTTTCCTGTTAAAGTCTTGACGAAGATCTGCATA 3475974 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| | || | || ||||| || || |||||| || |||||||| || || Sbjct 3474439 ACCACCTCGGAGGCGGAGTACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGA 3474380 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||||| | || |||| ||||| ||||| || ||||| | |||||| ||| | || Sbjct 3474379 CAATGTGCGTCCATCTTCCAGCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGG 3474320 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCA 33700 | || || ||||| || || || ||||| ||| ||||| | ||| | Sbjct 3474319 GATGCCCTCCTTGTCTTGGATCTTGGCCTT-AACATTTTCAATTGTGTCCGAGGGTTCAA 3474261 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| || || || || || ||||||||||||||| Sbjct 3474260 CTTCTAATGTGATGGTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCATA 3474211 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || || || ||||||||| ||||| || || || Sbjct 3475974 ACCACCACGGAGACGGAGTACCAAGTGGAGTGTCGACTCTTTTTGGATGTTATAGTCTGA 3475915 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||| || | || ||||| ||||| ||||| || || | ||| ||||| ||| | || Sbjct 3475914 TAGTGTACGACCATCCTCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGG 3475855 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| ||||| | || ||| | || | ||||| | ||| | Sbjct 3475854 GATACCTTCTTTGTCTTGGATTTT-AGCTTTAACGTTCTCGATAGTGTCTGAGGGTTCAA 3475796 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || || || || || || || || || |||||||||||| Sbjct 3475795 CTTCGAGGGTAATAGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATA 3475746 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| | || | || ||||| || || |||||| || |||||||| || || Sbjct 3474667 ACCACCTCGGAGGCGGAGTACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGA 3474608 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||||| | || ||||| ||||| ||||| || ||||| | ||||| ||| | || Sbjct 3474607 CAATGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGGTCTGGGGG 3474548 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCA 33700 | || || ||||| || || || ||||| ||| ||||| | ||| | Sbjct 3474547 GATGCCCTCCTTGTCTTGGATCTTGGCCTT-AACATTTTCAATTGTGTCCGAGGGTTCAA 3474489 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || || || || ||||||||||||||| Sbjct 3474488 CTTCTAATGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCATA 3474439 >seq48925 Length=1097090 Score = 109 bits (120), Expect = 4e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 |||||||| || || || || || || |||||||| ||||| | || ||| | || Sbjct 515388 AACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGACAACGTACGTCCATCT 515329 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 || || ||||| ||||| || ||||| | ||||||||| | || | || |||||||| Sbjct 515328 TCTAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGAATGCCCTCTTTGTCT 515269 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 ||||||| ||| | ||| || | ||||| | ||| || || | ||| || || Sbjct 515268 TGAATTTTCGCTTTTA-CATTTTCGATAGTGTCAGAGGCTTCAACCTCTAACGTTATGGT 515210 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTT 33753 |||||| || | |||||||| ||||||||||| ||| Sbjct 515209 TTTACCCGTGAGGGTTTTTACGAAGATCTGCATTGTT 515173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328450867823040