Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq48925 143 6e-29 seq61578 127 5e-24 >seq48925 Length=1097090 Score = 143 bits (158), Expect = 6e-29 Identities = 158/208 (76%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||| || || || || || ||| |||||||| ||||| Sbjct 515192 AAAACCCTCACGGGTAAAACCATAACGTTAGAGGTTGAAGCCTCTGACACTATCGAAAAT 515251 Query 206245 GTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| || ||| |||||||| ||||| || ||| || || |||||| | ||||| Sbjct 515252 GTAAAAGCGAAA-ATTCAAGACAAAGAGGGCATTCCACCAGATCAGCAAAGATTGATCTT 515310 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| || ||||| ||||||||| | || ||| |||| |||||| ||||||| || || Sbjct 515311 CGCCGGCAAACAGTTAGAAGATGGACGTACGTTGTCCGACTACAACATCCAGAAGGAATC 515370 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 || |||||| | || ||||| |||||| Sbjct 515371 AACACTTCACTTGGTGTTGAGGCTTCGA 515398 >seq61578 Length=3623949 Score = 127 bits (140), Expect = 5e-24 Identities = 151/202 (75%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | |||||||| || ||||| | ||||| ||| ||| ||| Sbjct 3475978 CAGATCTTCGTCAAGACTTTAACAGGAAAGACCATCACCCTCGAAGTTGAACCTTCAGAC 3476037 Query 206233 ACAGTCGA-ATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || | | |||||| ||| || ||||| |||||||| || || ||| || Sbjct 3476038 ACTATGGAGAACGTTAAAGCTAAA-ATCCAAGACAAAGAAGGTATCCCCCCAGACCAGCA 3476096 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | |||||||||||||| || |||||||| ||||| | || | ||||||||||| | Sbjct 3476097 ACGTCTTATCTTCGCCGGCAAACAGTTGGAGGATGGTCGTACACTCTCCGATTACAACAT 3476156 Query 206352 CCAGAAAGAGTCTACTCTTCAC 206373 |||||| ||||||||||||||| Sbjct 3476157 CCAGAAGGAGTCTACTCTTCAC 3476178 Score = 113 bits (124), Expect = 1e-19 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || || || || ||||| || ||||| ||| || ||| Sbjct 3474443 CAGATCTTTGTCAAGACCTTGACTGGCAAGACCATCACATTAGAAGTTGAACCCTCGGAC 3474502 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | ||| || ||| ||||| ||||| || || || || || ||| ||| Sbjct 3474503 ACAATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAA 3474562 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||||||||| || ||||||||||||||| | || ||| | || |||||| | Sbjct 3474563 AGATTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGCACATTGTCTGACTACAACATT 3474622 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||||||||| || || || Sbjct 3474623 CAGAAAGAGTCAACCCTGCA 3474642 Score = 109 bits (120), Expect = 1e-18 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || || ||||| ||||| || ||||| ||| || ||| Sbjct 3474215 CAGATCTTTGTCAAGACCTTGACTGGCAAAACCATCACATTAGAAGTTGAACCCTCGGAC 3474274 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | ||| || ||| ||||| ||||| || || || || || ||| || Sbjct 3474275 ACAATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAG 3474334 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||||||||| || ||| ||||||||||| | || ||| | || |||||| | Sbjct 3474335 AGATTGATCTTCGCCGGCAAACAGCTGGAAGATGGACGCACATTGTCTGACTACAACATT 3474394 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||||||||| || || || Sbjct 3474395 CAGAAAGAGTCAACCCTGCA 3474414 Score = 89.7 bits (98), Expect = 1e-12 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||| || || ||||| ||| |||||| | ||| || ||| Sbjct 3474008 ACGGGCAAGACCATCACCTTAGAGGTGGAGCCTTCGGACACAATTGAAAATGTTAAGGCC 3474067 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || || || || || | | || ||| | ||||||||||| | Sbjct 3474068 AAGATCCAAGACAAGGAGGGCATCCCCCCAGCCCAGCAGAGATTGATCTTCGCCGGCGAA 3474127 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 ||| ||||||||||| | || ||| | || |||||| | ||||||||||| || || || Sbjct 3474128 CAGCTGGAAGATGGACGCACATTGTCTGACTACAACATTCAGAAAGAGTCAACCCTGCA 3474186 Score = 87.8 bits (96), Expect = 4e-12 Identities = 142/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || || || | ||||| ||| || ||| Sbjct 3475750 CAGATCTTCGTCAAGACCTTGACTGGCAAGACTATTACCCTCGAAGTTGAACCCTCAGAC 3475809 Query 206233 ACAGTCGA-ATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| | | |||||| ||| || ||||| |||||||| || || ||| || Sbjct 3475810 ACTATCGAGAACGTTAAAGCTAAA-ATCCAAGACAAAGAAGGTATCCCCCCAGACCAGCA 3475868 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | |||||||||||||| || |||||||| ||||| | || | | || || ||| | Sbjct 3475869 ACGTCTTATCTTCGCCGGCAAACAGTTGGAGGATGGTCGTACACTATCAGACTATAACAT 3475928 Query 206352 CCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||| || || ||| Sbjct 3475929 CCAAAAAGAGTCGACACTCCAC 3475950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180864017454227