Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq48925 168 6e-37 seq18715 147 2e-30 seq26895 87.8 2e-12 seq61578 84.2 2e-11 >seq48925 Length=1097090 Score = 168 bits (186), Expect = 6e-37 Identities = 825/1290 (64%), Gaps = 37/1290 (3%) Strand=Plus/Plus Query 146549 CAACAGTGAATTGTTGTGTGTGCGCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTT 146608 |||| ||||| || || | || ||||| ||| |||| ||||||||||| || |||| Sbjct 839829 CAACTGTGAACTGAATTGCATTAGCGGCAGGCTTTATGCGTAAATAATACATTCCTGTTT 839888 Query 146609 TGAGGCCACATCGCCACGAGTGATTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCG 146668 | || || | ||| | || | ||||||||| |||| | | || | || || | Sbjct 839889 TCAGACCCATTTTCCATGCGTAAAAGTGAATCGACGTCAATTTTCCATAATTAGGTTCAG 839948 Query 146669 CCACGAAAAGATTAAACGATTGGCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCT 146728 |||| || ||||||||||| ||||| ||||| || || | ||| || ||||| | Sbjct 839949 CCACATGAATGTTAAACGATTGACTTTGGTCTATAAATGCTCCTCTGTCAGCGGCCATTT 840008 Query 146729 CAATCATGCGTTTTGTCT-TCATTTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATC- 146786 ||| | ||||| || || |||||| | ||||| |||| | | ||| |||| Sbjct 840009 TAATTGT-TGTTTTAACTGAAATCTCCCAAACTGTTTTATACAACTCTCTAA---TATCT 840064 Query 146787 --TGGAATACCTTCAATGTTTTGAATAGAGCCCTTG-TGCGCAAAAATAG-TGTTTCGTA 146842 ||| |||| ||||| |||||||| || || ||| || | | | || | ||| | Sbjct 840065 TTTGGTATACGCTCAATATTTTGAATGGAACCATTGTTGTGTATTATCAGATTCTTCATG 840124 Query 146843 TTTCGGGCGTGTAAAGGTTTAGTTTAATGAGGTC-ATCAATTAAATACTGATTGACCACT 146901 | | | | |||| | | | | | ||| |||| ||||| || || || || Sbjct 840125 TCTTCGTCCCATAAA--TCTGCCTGTGTTAAGTCTCTCAA-TAAATGATGGTTAACAACC 840181 Query 146902 TGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGAC 146961 || || || || | || |||||||| | || | || ||||| || ||||| ||| Sbjct 840182 TGGAATTCTCCAGACAAAACACGTCTTTGGTAAATGTTTGATGTGAACGGTTCAAAGGAC 840241 Query 146962 TCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAA 147021 |||||||| ||||| ||||| || || | || || ||||| || | | | |||| Sbjct 840242 TCATTATTTCCTAAGATTTGTGCTGTAGACGCTGTGGGCATTGGAGCTAATAGAAGTGAA 840301 Query 147022 TTTCGCAGACCGTACGCACGG--ATGTTGTCCTTCAAAGTTTGCCAGTCCCACATCGACG 147079 || || || || | | || || || || |||| | | ||||| ||| | || Sbjct 840302 TTGCGGAGTCC--ATGTTTGGCAATTTTATCTTTCAGAATAGACCAGTTCCAGA--GATC 840357 Query 147080 AG--GGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGC 147137 || || || | ||||||||| || || | | ||| | || || ||||| || | Sbjct 840358 AGTTGGAGTTTTATCCCACATGTCATATTGCAAGATGCCTTGGCTTGCAGGACTTCCTTC 840417 Query 147138 GAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATA 147197 | ||| | || ||| || ||||||| |||||| || || || | ||||| || Sbjct 840418 ATATGTACTATAAACTCCCTCTTTTTGCGCCAGTTCACAACTGGCTTCTAATGCTCCGTA 840477 Query 147198 GTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCAT 147257 |||||||||||| |||||||| ||| || | |||||||| || || || || || Sbjct 840478 ATATATGGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCTTCTTCACTTTCATATGGAAT 840537 Query 147258 ACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTC---GATG 147314 |||| || ||||| | ||| || || || || | || | || ||||||| || | Sbjct 840538 GCGCATTAGTACAAATGTATCAGCTAACCCTTGCACTCCAATACCTATAGGTCTGTGACG 840597 Query 147315 C-TTTTCG-TTGCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTG 147372 | | || | | | ||||| || | |||| || || ||||||||| || Sbjct 840598 CATGTTAGAATTTTTTGCTTCAGGCAC----TGGG-TAAAAATTAACATCAATAATTTTA 840652 Query 147373 TTGAGGTTACGCACTACAACTTTAGTTA-TTGTTTTGAGTTTCTCGAAATCATAAGTCCC 147431 || ||||| | | | || || | || ||| | ||| | || | || || Sbjct 840653 TTAAGGTTCTGTGTGATTATCTTTGTGACTTCTTTCAACTTTAT-AAAGTTGTATGTTTT 840711 Query 147432 GTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTC 147491 |||| || || | |||| || || || || | ||| || || || || Sbjct 840712 ATCTT---CATTAACAAACCTATTCAAAGCAATTGAAGCTAAATTACAAACAGCAACTTC 840768 Query 147492 TTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAA 147551 || || |||| | ||| ||||||| ||||| || |||||||||||| || | Sbjct 840769 ATCTGCTGAAGTGTATTCCACAATTTCGGTGCACAAATTACTGCATTTTATGGTGCCAAG 840828 Query 147552 ATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGT 147611 ||||| ||||| ||||| | ||| || | ||||| | |||||||| ||| ||| || Sbjct 840829 ATTTTTTTGATTACTTTTTCTATTACATGAATCTTTATACAGCATGTATGGTGTGCCCGT 840888 Query 147612 CTCGACTTGCGTTTCAACGATAAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATA 147671 || ||||| | ||| | || | ||| || || ||||| || ||| | | Sbjct 840889 TTCCACTTGTGCTTCTATTATTGCTTTCCACAGTTCTTGAGCTCGGACTTGCTTAACAAA 840948 Query 147672 GCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGC 147731 | || | ||| || || ||||| ||||| || || || | ||||| || Sbjct 840949 TCTTTTTTCCTGTTCATATTTTTCATACAATGCTTCAAATTCTTCTCCCCAACAATCAGC 841008 Query 147732 AAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCG 147791 ||| ||||| || | ||| |||||||| || |||||| || || | || ||| Sbjct 841009 AAGACCGGGGCAATCATGAGGACACATTAGACTCCACATTTCATCTTTTTCTACACGTTT 841068 Query 147792 CATAAACAGATCCGGCACCCACAGCGCGTA 147821 |||||| | ||| || | ||| | ||||| Sbjct 841069 CATAAATAAATCTGGGATCCATAAGGCGTA 841098 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 ||| ||||| || | |||| || || || |||||||||||| || ||||| ||| Sbjct 515389 CAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGACAACGTACGTCCATC 515330 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| | |||||| |||| |||| | | || |||||||| || ||||| ||||| || Sbjct 515329 TTCTAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGAATGCCCTCTTTGTC 515270 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 |||||| ||| | | ||| | ||| || | | || || || | ||| | || Sbjct 515269 TTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCAACCTCTAACGTTATGGT 515210 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||| || || ||||||| ||| |||||||| Sbjct 515209 TTTACCCGTGAGGGTTTTTACGAAGATCTGCAT 515177 >seq18715 Length=1377716 Score = 147 bits (162), Expect = 2e-30 Identities = 300/439 (68%), Gaps = 14/439 (3%) Strand=Plus/Plus Query 24889 CCCAATTTGTCGCACTTGCTATACGCTTTCGTGCCGATATGCGGCGGCGAGGGCATAAAC 24948 || ||| || |||| | | |||| |||| | || || ||||| ||||| ||||| ||| Sbjct 1370065 CCTAATCTGACGCATCTTTTGTACGGTTTCATTCCTATTTGCGGAGGCGACGGCATCAAC 1370124 Query 24949 GACGCTCTCAAAACAGTTCCC-GGTAGTTTTGAGGCGCTGCAGCGCTCGTGCGCCGGGCG 25007 ||| | | ||| || || || ||||| | || || || || || ||| ||| || Sbjct 1370125 GACAGTTT-AAAGGAGATCGAAGGCAGTTTCCAAGCTCTTCAACGATCATGCAGCGGCCG 1370183 Query 25008 CGACGATTTTAAGGTAACCATTCACGACCCCTGGGCCGCCATCCAGAAACCGCAGAAAGG 25067 ||| ||||| || || | ||||||||||| |||||||| | ||||| || ||||| || Sbjct 1370184 CGAAGATTTCAAAGTTTCTATTCACGACCCGTGGGCCGCTCTTCAGAAGCCACAGAAGGG 1370243 Query 25068 CGTCTCCACTTGGAACGAGCCGTACAAAGGCAACTTTGGACAATTAATGGGCCTGAAATT 25127 | || | ||||| || || ||||||||||||||||| || | ||| || ||| Sbjct 1370244 ACTGTCTTCCTGGAATGAACCATACAAAGGCAACTTTGGTCAGCTGATGTCTCTCAAACA 1370303 Query 25128 AGCTAATCCACACTTGAAGGTGCTGGCGTCGATCGGCGGCTGGAC-CTTGTCAGATCCAT 25186 ||| | || | | || | || | || ||||| |||||||| |||| | ||||| | Sbjct 1370304 AGCCAGGCCTGAACTTAAAATTCTACCTTCCATCGGAGGCTGGACTCTTG-CCGATCCCT 1370362 Query 25187 TCT-----TTCACATGCATGACGCGACCGTGCGTCAAACGTTCATCGATTCCGTCGAGGA 25241 ||| ||||| || | | || ||| ||| | ||||| || | || Sbjct 1370363 TCTTCTTCTTCACCGACA--AAGAGAAGAGAGGTC---GCTTCGTTGATTCTGTGAAAGA 1370417 Query 25242 CTTTCTCTTGACTTGGAAGTTTTTCGACGGCGTCGACATTGACTGGGAGTTTCCGGGCGG 25301 ||||| | || |||||||| |||||||| || || || || ||||| || || ||||| Sbjct 1370418 TTTTCTTCTAACCTGGAAGTTCTTCGACGGTGTTGATATCGATTGGGAATTCCCTGGCGG 1370477 Query 25302 CAAAGGGGCCAATCCTCAC 25320 || || || || ||| || Sbjct 1370478 TAAGGGAGCTAACCCTGAC 1370496 >seq26895 Length=1000185 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 51741 TTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGAGCGCCGTGGTCGCTGC-CGGT 51799 ||||| | |||||||||||| |||| || ||||| || ||||| || || |||| | | Sbjct 288910 TTGCCGAGGTCGCCGACGTGACGCACAGCGGCGTTGGGGGCGCCATGCTC-CTGCTTGTT 288852 Query 51800 GGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGTGCAC 51859 |||||| ||||| | || || || ||||| || || || |||| || || |||||||| Sbjct 288851 GGGGTTAAAGTGGGCACCTGCAGATGTGCAACCATTTGTGTTGTCACCAAACTCGTGCAC 288792 Query 51860 GTGGAATCCGTG 51871 || || ||||| Sbjct 288791 ATGAAAACCGTG 288780 >seq61578 Length=3623949 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||||||||| ||||| ||||| | ||||| ||| || | |||||| |||| Sbjct 3475940 GACTCTTTTTGGATGTTATAGTCTGATAGTGTACGACCATCCTCCAACTGTTTGCCGGCG 3475881 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| ||||| || || ||||| || || |||||||| || ||||| ||| | Sbjct 3475880 AAGATAAGACGTTGCTGGTCTGGGGGGATACCTTCTTTGTCTTGGATTTTAGCTTTAACG 3475821 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||| || | || || ||||||| || | || || ||||||| || || Sbjct 3475820 TTCTCGATAGTGTCTGAGGGTTCAACTTCGAGGGTAATAGTCTTGCCAGTCAAGGTCTTG 3475761 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 3475760 ACGAAGATCTGCAT 3475747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476234754601320