Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq18715 381 5e-101 seq48925 131 1e-25 seq26895 86.0 6e-12 >seq18715 Length=1377716 Score = 381 bits (422), Expect = 5e-101 Identities = 909/1358 (67%), Gaps = 41/1358 (3%) Strand=Plus/Plus Query 59786 AACTATGTAATTCGGACGGATGCACTTCGAGTCAGCCGGTCGATGTTGTCATTGCAGATA 59845 |||| || || || |||||||| |||| ||| |||| || |||| | || |||| Sbjct 1369859 AACTCTGCAACTCTGACGGATGTTCTTCCAGTGAGCCTACAGAGATTGTAGTAGCTGATA 1369918 Query 59846 CCGACGGCTCTCATCTCGCTCCGTTATATTATGAATATCA----AGAACTGAACCAGCCC 59901 | ||||| ||||| |||| || ||| | | | ||| ||| |||| Sbjct 1369919 CTGACGGTAGCCATCTACCTCCATTG----ATGTACACCCTTGGAGAGAAGAATAAGCCA 1369974 Query 59902 TTCGAAAGTCGAGTAGTGGATAAAGTCGTTGCCGCATATTTTGTCGAATGGGGTGTTTAT 59961 ||| || |||| ||| ||||| || | || || ||||| |||||||||||||| Sbjct 1369975 TTCAAACA--GAGTTCAGGA-AAAGTTGTCGGAGCGTACTTTGTTGAATGGGGTGTTTAC 1370031 Query 59962 CCTAGAAATTTTCCTGTAGATCGAGTGCCCACTCCTAATCTATCGCATATTCTATACGGA 60021 || ||||| || || || ||||| || || | ||||||||| ||||| || | ||||| Sbjct 1370032 CCAAGAAAATTCCCAGTCGATCGTGTACCGATTCCTAATCTGACGCATCTTTTGTACGGT 1370091 Query 60022 TTTATTCCGATATGCGGCGGCGACGGTATCAACGACAGTCTTAAAACCATAACCGGTAGT 60081 || ||||| || ||||| |||||||| |||||||||||| | || || || ||| Sbjct 1370092 TTCATTCCTATTTGCGGAGGCGACGGCATCAACGACAGTTTAAAGGAGATCGAAGGCAGT 1370151 Query 60082 TTCGAAGCGCTTCAGCGATCGTGTTCAGGTCGAGACGACTTTAAAGTATCAATTCACGAT 60141 ||| |||| ||||| ||||| || || || || || || ||||| || |||||||| Sbjct 1370152 TTCCAAGCTCTTCAACGATCATGCAGCGGCCGCGAAGATTTCAAAGTTTCTATTCACGAC 1370211 Query 60142 CCATGGGCCGCCGTCCAGAAACCCCAAAAACAAGTAACCGCTTGGAACGAACCATACAAA 60201 || |||||||| | ||||| || || || | | | | ||||| |||||||||||| Sbjct 1370212 CCGTGGGCCGCTCTTCAGAAGCCACAGAAGGGACTGTCTTCCTGGAATGAACCATACAAA 1370271 Query 60202 GGTAATTTCGGACAATTAATGGCAGCCAAACTGGCAAATCCCCACATCAAAGTGTTGCCC 60261 || || || || || | ||| | ||||| || | || | | ||| | | || Sbjct 1370272 GGCAACTTTGGTCAGCTGATGTCTCTCAAACAAGCCAGGCCTGAACTTAAAATTCTACCT 1370331 Query 60262 TCGATCGGAGGTTGGACTCTATCCGATCCGTTCTTTTACTTTCACGATACGGATAAACGA 60321 || |||||||| |||||||| ||||||| ||||| | ||| ||| | || || || Sbjct 1370332 TCCATCGGAGGCTGGACTCTTGCCGATCCCTTCTTCTTCTTCACCGACAAAGAGAA--GA 1370389 Query 60322 AAGAT--TTTTGTAGATTCTGTCGTGGAGTTTCTACAGACGTGGAAATTTTTCGACGGTG 60379 || | || || |||||||| || ||||| | || ||||| || |||||||||| Sbjct 1370390 GAGGTCGCTTCGTTGATTCTGTGAAAGATTTTCTTCTAACCTGGAAGTTCTTCGACGGTG 1370449 Query 60380 TCGACATCGACTGGGAGTTTCCCGGCGGAAAAGGTGCCAATCCCAACGTAGGCGACGCCG 60439 | || ||||| ||||| || || ||||| || || || || || || ||| || ||| Sbjct 1370450 TTGATATCGATTGGGAATTCCCTGGCGGTAAGGGAGCTAACCCTGACCTAG--GAAGCCC 1370507 Query 60440 AACGCGATCGCGAAACGTACACCAT--TCTGTTGAAAGATTTACGCGAGGCGCTAGATCG 60497 | | || || || | || || | | |||| || || || || | | || || Sbjct 1370508 TAAG-GA-CG-GAGATGTTTACGTTGAATTAATGAAGGAATTGCGTGAAATG-TTGAACG 1370563 Query 60498 ATTAACCCTC-GAAACGAATCGAACG---TACGAGTTGACCAGCGCAATTAGCGCCGGCG 60553 | | || ||| || | | | |||||| |||| ||| ||||| || || Sbjct 1370564 ---ACCTTTCTGAAGAGACCGGTAAGAAATACGAGCTGACTTCCGCTATTAGTGCTGGAT 1370620 Query 60554 ATGACAAAATCGCCGTCGTCGACTACACCGCTGCTCAAGAATATTTAGATTTAAtttttt 60613 || || || || ||||| |||| || ||||| |||| | ||| ||||| Sbjct 1370621 GGGATAAGATTCAAGTGGTCGATTACAGCGAGGCTCAGAAATACATGGATCACATTTTCC 1370680 Query 60614 tGATGACGTACGATTTTAAAGGAGCCTGGTCGAATAACGATCTGGGCTATCAGACTACTC 60673 | |||| || ||||||||||| |||||||| ||| || || || ||||||| | | Sbjct 1370681 TCATGAGTTATGATTTTAAAGGCGCCTGGTCTAATGACACCCTCGGTCATCAGACACCGC 1370740 Query 60674 TATACGCTCCTTCGTTTAATCCTAAAGAACATTATACTACCGATTTTGCCGTTCGTGCTC 60733 | ||||||||| | | || || || ||| |||||| || || |||| || | Sbjct 1370741 TTTACGCTCCTGCTTGGAACCCCAAGGAAACTTATACCACTGACTTTGGTGTGAAATATT 1370800 Query 60734 TACTCAAGCAAAAAGTCGAGAATaaaaaaaTTATTGTCGGCGTGGCCATGTACGGTCGCG 60793 | || ||| ||| | ||| || ||| | || || || || |||||||| || | Sbjct 1370801 TGCTTGCTCAAGGCGTCAACCCTAAGAAGATTGTGGTGGGTGTAGCTATGTACGGACGAG 1370860 Query 60794 GCTGGACCGGCGTAAGCGATTTTGTTGACGATAATAATCCATTTTCCGGAACGGCCAAGG 60853 |||||||||| || | | | || |||| |||||||| | || | || | | Sbjct 1370861 GCTGGACCGGGGTTCACAACT---ACGAAAATAACAATCCATTCACTGGCAACGCGACTG 1370917 Query 60854 GACCGGTCAAAGGAACATGGGAAGACGGAGTCGTCGACTATAGAGAGATTTTCAATAATT 60913 |||| |||||||| || ||| ||||||| || || || |||||||| || ||| | Sbjct 1370918 GACCTGTCAAAGGTACTTGGCAAGACGGTGTAGTTGATTATAGAGAAATAGCAAATGAAA 1370977 Query 60914 TCGTCGCCAATAACCCGATGGAA----TATTACGATTCCGTTGCAAAAGCGGCGTACGTC 60969 ||| | || | |||| | |||||||| |||||| |||| | || || Sbjct 1370978 TCG----CTATGGGCAAATGGGAGTTCCATTACGATAACGTTGCTGAAGCTCCTTATGTG 1371033 Query 60970 TTTAATAACTCGACCGGCGAGCTCATCACTTACGACAATCCTCGGTCGGTTCTGGATAAA 61029 || |||||||| || || || || ||||| ||||| || ||| | | | ||| Sbjct 1371034 TTCCGGCCATCGACCGGTGACCTAATAACGTACGATAATCCCCGATCGACTATTGCGAAA 1371093 Query 61030 GCAAAATATGTATTGGACTATAGCTTGGGTGGTTTGTTCGCTTGGGAGATCGACGCCGAC 61089 | || |||||| || ||| |||| ||||||||||| |||||||| || || ||| Sbjct 1371094 GGCAAGTATGTAAGAAACAATAAGCTGGGCGGTTTGTTCGCGTGGGAGATTGATGCAGAC 1371153 Query 61090 AACGGATTACTTCTAAACGCCATGAACAGCGGTCTCGG 61127 || || ||| ||||||||||||||| |||||||| Sbjct 1371154 AATGGTGAACTATTAAACGCCATGAACATGGGTCTCGG 1371191 >seq48925 Length=1097090 Score = 131 bits (144), Expect = 1e-25 Identities = 686/1080 (64%), Gaps = 20/1080 (2%) Strand=Plus/Plus Query 136639 ACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTT 136698 || ||||| || |||| ||| |||||||| || | | | ||| ||||| || || || Sbjct 839831 ACTGTGAACTGAATTGCATTAGCGGCAGGCTTTATGCGTAAATAATACATTCCTGTTTTC 839890 Query 136699 AAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGCC 136758 | |||| | | ||| | ||| || || || | ||| || ||| | || || ||| Sbjct 839891 AGACCCATTTTCCATGCGTAAAAGTGAATCGACGTCAATTTTCCATAATTAGGTTCAGCC 839950 Query 136759 ACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTTC 136818 || || || | |||||| || || || || | | ||| | ||| |||||||| || Sbjct 839951 ACATGAATGTTAAACGATTGACTTTGGTCTATAAATGCTCCTCTGTCAGCGGCCATTTT- 840009 Query 136819 AATAGTACTTTTTGCTTAATT-TCCCAAGCGGTTTTAAAGAGCTCCTTGACATTGGGCGG 136877 ||| || |||| || || | |||||| | |||||| | | ||| | | || || Sbjct 840010 AATTGTTGTTTTAACTGAAATCTCCCAAACTGTTTTATACAACTCTCTAATATCTTTTGG 840069 Query 136878 AATTTCATCGATATTCTGTACAGATCCGTTGTTTTTGATGATT---TTCATCATGAGATC 136934 || || ||||| || | || || ||||| | || || ||| ||||| || Sbjct 840070 TATACGCTCAATATTTTGAATGGAACCATTGTTGTGTATTATCAGATTCTTCATGTCTTC 840129 Query 136935 AGTCGAGTATACGTTGCTCTCTATGAGTTTATCGACGAGATGCTGATTTACTACTTGATA 136994 ||| || | | || | | | ||| | || | | ||| || || || || || | Sbjct 840130 -GTCCCATAAATCTGCCTGTGT-TAAGTCTCTCAATAA-ATGATGGTTAACAACCTGGAA 840186 Query 136995 TTCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTCGAACGATTCGTT 137054 ||| || || | || | | | ||| | || |||||||| || || || || || Sbjct 840187 TTCTCCAGACAAAACACGTCTTTGGTAAATGTTTGATGTGAACGGTTCAAAGGACTCATT 840246 Query 137055 GTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAATGAATTCCG 137114 || || || || ||||| || | |||||| ||||| ||| | | | |||||| || Sbjct 840247 ATTTCCTAAGATTTGTGCTGTAGACGCTGTGGGCATTGGAGCTAATAGAAGTGAATTGCG 840306 Query 137115 TAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTCCAGTTCCACAGATT-GTTCGATT 137173 | || ||| ||| | || | || || ||||||||| |||| ||| || Sbjct 840307 GAGTCCATGTTTGGCAATTTTATCTTTCAGAATAGACCAGTTCCAGAGATCAGTTGGA-- 840364 Query 137174 GGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTGCAGGACTTTCTGCATAAG 137233 ||| ||| ||||| ||| | ||||| | || | |||||||||||| || |||| | Sbjct 840365 --GTTTTATCCCACATGTCATATTGCAAGATGCCTTGGCTTGCAGGACTTCCTTCATATG 840422 Query 137234 AATCATATGTTCCGTGCAGTTTCGCCAGTTCAATACTCTGGACTAGTGCGCCATAGTAAA 137293 | ||| ||| | || |||||||||| ||| ||| ||| || || || | Sbjct 840423 TACTATAAACTCCCTCTTTTTGCGCCAGTTCACAACTGGCTTCTAATGCTCCGTAATATA 840482 Query 137294 TAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTGGCTGTCGTAGGGCATATCCA 137353 | |||||| |||||| | || | || | ||||||| || || || || || || Sbjct 840483 TGGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCTTCTTCACTTTCATATGGAATGCGCA 840542 Query 137354 ATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCGATAGGTCTGTGTTTAAAAT 137413 || | || | ||| || | ||||| | || ||||| ||||||||||| | | Sbjct 840543 TTAGTACAAATGTATCAGCTAACCCTTGCACTCCAATACCTATAGGTCTGTGACGCATGT 840602 Query 137414 TTGATATTTGAGCGCTAACAAGCGGATAAAAGTTTGCGTCTATAATTCTATTGAGATTGT 137473 | || ||| || | | || ||||| || | || |||||| |||| || || | Sbjct 840603 TAGAATTTTTTGCTTCAGGCACTGGGTAAAAATTAACATCAATAATTTTATTAAGGTTCT 840662 Query 137474 TAGTAACGACTCTGGACACTTTGTAGAGCAATTCGAAATCGAAGCTTTTAGACTGTTTGT 137533 || | | | | |||| | | | | || | | | ||||| | || | Sbjct 840663 GTGTGATTATCTTTGTGACTTCTTTCAACTTTATAAAGTTGTATGTTTTA---TCTTCAT 840719 Query 137534 TAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGCATACGGCCGTTTC-TGTATTGTCG 137592 || |||| |||| | ||||| || ||||| || || || || ||| | | || | Sbjct 840720 TAACAAACCTATTCAAAGCAATTGAAGCTAAATTACAAACAGCAACTTCATCTGCTGAAG 840779 Query 137593 CTGTATTGTACAATTTCGGCGCAAAGATTGCTGTTTCGGATCACTCCCAAATTCTTTTGA 137652 |||||| |||||||||| ||| | ||| ||| | || || | ||| |||||| Sbjct 840780 -TGTATTCCACAATTTCGGTGCACAAATTACTGCATTTTATGGTGCCAAGATTTTTTTGA 840838 Query 137653 TTGTTTTTCTCGTTGACGTG-ATCTTTATATATCATATACGGAGTTCCGGTTTCGACTTG 137711 || |||| || | || || ||||||||| | ||| || || || || ||||| ||||| Sbjct 840839 TTACTTTT-TCTATTACATGAATCTTTATACAGCATGTATGGTGTGCCCGTTTCCACTTG 840897 Score = 114 bits (126), Expect = 1e-20 Identities = 176/248 (71%), Gaps = 6/248 (2%) Strand=Plus/Plus Query 25159 TTTTCAATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGAT 25218 ||| || ||||||| |||| | || |||||||| | || || ||| | || ||| | Sbjct 515163 TTTACAGCTAAACAA--TGCAGATCTTCGTAAAAACCCTCACGGGTAAAACCATAACGTT 515220 Query 25219 CGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGG 25278 || || |||||| || |||||||| | |||||| |||||| || |||||||| Sbjct 515221 AGAGGTTGAAGCCTCTGACACTATCGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGGG 515280 Query 25279 TATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA- 25337 || || || |||||||||||| | || | || ||||||||| | ||||||| | | Sbjct 515281 CATTCCACCAGATCAGCAAAGATTGATCTTCGCCGGCAAACAGTTAGAAGATGGACGTAC 515340 Query 25338 -ATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGA 25396 |||| ||| ||||| || || || ||||| || |||| || ||||| || | || Sbjct 515341 GTTGTC--CGACTACAACATCCAGAAGGAATCAACACTTCACTTGGTGTTGAGGCTTCGA 515398 Query 25397 GGAGGAAA 25404 ||||| || Sbjct 515399 GGAGGTAA 515406 >seq26895 Length=1000185 Score = 86.0 bits (94), Expect = 6e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 105771 CACGGCTTTCATGTACACGAATTCGGCGACACGAGCAACGGTTGCACGTCTGCCGGCGAG 105830 ||||| |||||||| ||||| || || |||| | || |||||||| ||||| || | Sbjct 288780 CACGGTTTTCATGTGCACGAGTTTGGTGACAACACAAATGGTTGCACATCTGCAGGTGCC 288839 Query 105831 CATTTCAACCCTA-CGGGCATGGCTCACGGCGCGCCCAGCTCTGCCGTTCGTCACGTCGG 105889 || || ||||| | | ||| || || ||||| |||| | | || || ||||||||||| Sbjct 288840 CACTTTAACCCCAACAAGCA-GGAGCATGGCGCCCCCAACGCCGCTGTGCGTCACGTCGG 288898 Query 105890 TGATCTTGGCAATATTGATGC 105910 || || ||||| ||||| || Sbjct 288899 CGACCTCGGCAACATTGAAGC 288919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444742847751840