Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq9460 138 9e-28 seq26895 102 7e-17 seq61578 84.2 2e-11 >seq9460 Length=1391182 Score = 138 bits (152), Expect = 9e-28 Identities = 190/266 (71%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 99851 ATGTCCGGCCCCGTGCACCCTAAATACGGCACTAAATCTGCACGTTTAGAAACTTTTGTG 99910 ||| |||||||||||||||| ||||| | | | | || ||| | || || Sbjct 538867 ATGCCCGGCCCCGTGCACCCCCGATACGCCTCCGAGGCGGCGCGTCTCCGCACCTTCAAA 538926 Query 99911 GATTGGCCGCTCAGTTTGAAACAAAAACCAGAGCAATTGGCCGAAGCCGGTTTTTATTAC 99970 || ||||||| | || ||| ||||||||| | |||| || ||||| || | ||| Sbjct 538927 GACTGGCCGCGGTGCATGCGACAGAAACCAGAGGAGCTGGCGGAGGCCGGCTTCTTCTAC 538986 Query 99971 ACCGGCAAAGGTGACAAAGTTAAATGTTTTCATTGCGACGGCGGCCTCAAAGACTGGGAA 100030 |||||| | || |||||| ||||| || | ||||||||||||||||| |||||||| Sbjct 538987 ACCGGCCACGGCGACAAAACGAAATGCTTCTACTGCGACGGCGGCCTCAAGGACTGGGAG 539046 Query 100031 AGCACCGACGAGCCGTGGCATGAACACGCACGTTGGTTTGATCGCTGCACATACGTGCGG 100090 | | ||||| |||||| | | ||||| || ||||| || |||||| | ||||| | | Sbjct 539047 AACGACGACGTCCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGCTGCGCTTACGTTCAG 539106 Query 100091 CTTGTAAAGGGTTACGACTACGTGCA 100116 || || || || ||||||||| || Sbjct 539107 CTGGTGAAAGGCCGCGACTACGTACA 539132 Score = 109 bits (120), Expect = 4e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 99637 CAACGGGTTTTATTATTTGGGGCGCGCGGACGAAGTGCGCTGCGCGTTTTGCAAAGTTGA 99696 |||||| || || || | || |||| ||||| || |||||||| ||||| ||||| || Sbjct 538632 CAACGGCTTCTACTACCTCGGCCGCGGCGACGAGGTCCGCTGCGCCTTTTGTAAAGTCGA 538691 Query 99697 AATAATGCGCTGGTTGGAGGGCGACGACCCGGCTGCAGATCATAAACGATGGGCGCCGCA 99756 ||| ||||||||| |||||||||||||||| ||| || || | || ||||| ||||| Sbjct 538692 AATCATGCGCTGGGTGGAGGGCGACGACCCCGCTAAGGACCACCAGCGGTGGGCCCCGCA 538751 Query 99757 ATGCCCGTTTATG 99769 ||||| ||| || Sbjct 538752 GTGCCCCTTTCTG 538764 >seq26895 Length=1000185 Score = 102 bits (112), Expect = 7e-17 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 104340 TTGCCTAAATCGCCGACGTGACGTTCCGCAGCGTCAGGCGCGCCATGTTGTTGGTGTGTG 104399 ||||| | |||||||||||||| | || |||| || |||||||| | || | || Sbjct 288910 TTGCCGAGGTCGCCGACGTGACGCACAGCGGCGTTGGGGGCGCCATGCTCCTGCTTGTTG 288851 Query 104400 GGGTTAAAGTGCTCGCCTGCCGACGTGCACCCATTGCTAATGTCGCCAAACTCGTGCACG 104459 ||||||||||| | ||||| || ||||| ||||| | |||| |||||||||||||| Sbjct 288850 GGGTTAAAGTGGGCACCTGCAGATGTGCAACCATTTGTGTTGTCACCAAACTCGTGCACA 288791 Query 104460 TGAAAACCATG 104470 |||||||| || Sbjct 288790 TGAAAACCGTG 288780 >seq61578 Length=3623949 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || || || || || |||||||||||||| |||||| | ||| |||||| Sbjct 3475747 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACTATTACCCTCGAAGTTGAACCCTCA 3475806 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || || | | | || ||| ||||| ||||||||||| | ||| || || Sbjct 3475807 GACACTATCGAGAACGTTAAAGCTAAAATCCAAGACAAAGAAGGTATCCCCCCAGACCAG 3475866 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGCGATTACA 106437 ||| | ||||| | || |||||||| || || ||| || | ||||| || || | Sbjct 3475867 CAACGTCTTATCTTCGCCGGCAAACAGTTGGAGGATGGTCGTACACTAT--CAGACTATA 3475924 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGTA 106469 |||| |||||||| || ||||| || || ||| Sbjct 3475925 ACATCCAAAAAGAGTCGACACTCCACTTGGTA 3475956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402019769369696