Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq43931 109 8e-18 seq40360 109 8e-18 >seq43931 Length=2439668 Score = 109 bits (120), Expect = 8e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || ||||| |||||||| || ||||||||| |||| | || || | |||| || Sbjct 171523 ATTTACAAAGTGCTCAAACAAGTGCACCCCGACACCGGT-----ATA-TCGAGCAAGGCC 171470 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||| ||||| ||||||||||| |||| || |||| | |||||| Sbjct 171469 ATGTCTATCATGAATTCGTTCGTCAACGACATCTTCGAACGTATCGCGGCTGAGGCCTCC 171410 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || |||||||||| || || | | ||| | ||||| ||||| Sbjct 171409 CGTCTCGCCCACTACAACAAGCGCTCTACCATAACATCAAGGGAGGTGCAGACATCCGTG 171350 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | ||| | ||| ||| ||| | |||| |||||||||| || ||||| Sbjct 171349 AGACTGCTACTGCCCGGTGAATTAGCCAAGCACGCCGTCAGTGAAGGCAC 171300 Score = 109 bits (120), Expect = 8e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || ||||| |||||||| || ||||||||| |||| | || || | |||| || Sbjct 179454 ATTTACAAAGTGCTCAAACAAGTGCACCCCGACACCGGT-----ATA-TCGAGCAAGGCC 179401 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||| ||||| ||||||||||| |||| || |||| | |||||| Sbjct 179400 ATGTCTATCATGAATTCGTTCGTCAACGACATCTTCGAACGTATCGCGGCTGAGGCCTCC 179341 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || |||||||||| || || | | ||| | ||||| ||||| Sbjct 179340 CGTCTCGCCCACTACAACAAGCGCTCGACCATAACATCAAGGGAGGTGCAGACATCCGTG 179281 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | ||| | ||| ||| ||| | |||| |||||||||| || ||||| Sbjct 179280 AGACTGCTACTGCCCGGTGAATTAGCCAAGCACGCCGTCAGTGAAGGCAC 179231 >seq40360 Length=19948 Score = 109 bits (120), Expect = 8e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || ||||| |||||||| || ||||||||| |||| | || || | |||| || Sbjct 2522 ATTTACAAAGTGCTCAAACAAGTGCACCCCGACACCGGT-----ATA-TCGAGCAAGGCC 2469 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||| ||||| ||||||||||| |||| || |||| | |||||| Sbjct 2468 ATGTCTATCATGAATTCGTTCGTCAACGACATCTTCGAACGTATCGCGGCTGAGGCCTCC 2409 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || |||||||||| || || | | ||| | ||||| ||||| Sbjct 2408 CGTCTCGCCCACTACAACAAGCGCTCGACCATAACATCAAGGGAGGTGCAGACATCCGTG 2349 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | ||| | ||| ||| ||| | |||| |||||||||| || ||||| Sbjct 2348 AGACTGCTACTGCCCGGTGAATTAGCCAAGCACGCCGTCAGTGAAGGCAC 2299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7171716697712294