Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq48925 232 7e-56 seq18715 188 7e-43 seq61578 100 3e-16 >seq48925 Length=1097090 Score = 232 bits (256), Expect = 7e-56 Identities = 701/1071 (65%), Gaps = 15/1071 (1%) Strand=Plus/Minus Query 8254 GAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGC 8313 ||||| || | || ||||||||||| ||||| | || || ||||| ||||||| Sbjct 840891 GAAACGGGCACACCATACATGCTGTATAAAGATTCATGTAATAGAAAAAGTAATCAAAAA 840832 Query 8314 AACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCC 8373 || | |||||||| ||||| ||| ||||| | |||||||| | |||| | | Sbjct 840831 AATCTTGGCACCATAAAATGCAGTAATTTGTGCACCGAAATTGTGGAATACACTTCAGCA 840772 Query 8374 GACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAAACGCGTTCGTTGATCGACGC 8433 || ||||| || ||||| ||| |||| || | ||| || ||| ||| || || | Sbjct 840771 GATGAAGTTGCTGTTTGTAATTTAGCTTCAATTGCTTTGAATAGGTTTGTTAAT-GAAGA 840713 Query 8434 TCAAACACTTACGACTTTGAACAATTGAAAAACGCCGTGCAAGTGACGGTACGCAATTTA 8493 | ||||| ||| ||||| | | |||||| | | | | | | || || | Sbjct 840712 TAAAACA--TACAACTTTATAAAGTTGAAAGAAGTCACAAAGATAATCACACAGAACCTT 840655 Query 8494 GATCGCATCATTGATGTCAATTTTTATCCCTTGGAAGAAGCGCGCGTATCGAACATGCGC 8553 || || |||||||| |||||||| || || ||||| || |||||||| Sbjct 840654 AATAAAATTATTGATGTTAATTTTTACCCAGTGCCTGAAGCAAAAAATTCTAACATGCGT 840595 Query 8554 CACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGCCATGTTGCGCCTC 8613 |||||||| | || | || |||||||| | || || | |||| | ||||| | Sbjct 840594 CACAGACCTATAGGTATTGGAGTGCAAGGGTTAGCTGATACATTTGTACTAATGCGCATT 840535 Query 8614 CCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAATAGCGGAAACGGTGTATTAC 8673 || || ||||| ||||||| | || ||| | |||| ||||| | |||||| Sbjct 840534 CCATATGAAAGTGAAGAAGCAATTAAACTTAACCAACAAATCTTCGAAACCATATATTAC 840475 Query 8674 GGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAGAATTGGGCACGTACGAATCGTACGCG 8733 || |||||||||||||| ||| |||| || | | || ||| || | || | Sbjct 840474 GGAGCATTAGAAGCCAGTTGTGAACTGGCGCAAAAAGAGGGAGTTTATAGTACATATGAA 840415 Query 8734 GGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACATGTGGAATGTCACGCCCACCTCT 8793 || || ||||| |||| || || |||||||| ||||||||| || || || || | Sbjct 840414 GGAAGTCCTGCAAGCCAAGGCATCTTGCAATATGACATGTGGGATAAAACTCCAACTGAT 840355 Query 8794 TTGTGGAATTGGAGCGATT-TGAAACGCAAAATTGCTCAATTCGGTTTGCGCAATTCGCT 8852 | ||||| ||| | ||| ||||| |||||||| || || | |||||||| || Sbjct 840354 CTCTGGAACTGG-TCTATTCTGAAAGATAAAATTGCCAAACATGGACTCCGCAATTCACT 840296 Query 8853 GTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAATGGGAAACAACGAATCCTT 8912 | | ||| |||||||| || | || || ||||| | ||||| || || ||||| Sbjct 840295 TCTATTAGCTCCAATGCCCACAGCGTCTACAGCACAAATCTTAGGAAATAATGAGTCCTT 840236 Query 8913 TGAGCCGTTCACCAACAACGTGTACGTGAGACGAGTGTTGGCCGGCGATTTTTTAATGCT 8972 ||| |||||||| ||| | ||| ||||| || ||| | || || || | | Sbjct 840235 TGAACCGTTCACATCAAACATTTACCAAAGACGTGTTTTGTCTGGAGAATTCCAGGTTGT 840176 Query 8973 GAATCGTCATTTGATGCGCGACTTGATCGAAGCGGGCGTTTACGACGACAAAATGCGCGA 9032 || | |||||| || | ||||| | | || | | | ||||| | ||| | Sbjct 840175 TAACCATCATTTATTGAGAGACTTAACACAGGCAGATTTATGGGACGAAGACATGAAGAA 840116 Query 9033 TGCCATCGTGGAAGCCAACGGCAGCGTTCAGAACATTGACGCG-GTGCCTCAACACATTA 9091 | || | | ||| || | |||| || ||||| ||| | || || | |||| Sbjct 840115 TCTGATAATACACAACAATGGTTCCATTCAAAATATTGA-GCGTATACCAAAAGATATTA 840057 Query 9092 AAGAGCTGTATAAAACCGTTTGGGA-AATGAAGCAAAGCACGCTGATCGGCATGGCTGCG 9150 |||| |||||||||| |||||||| | | || || || || ||||| || Sbjct 840056 GAGAGTTGTATAAAACAGTTTGGGAGATTTCAGTTAA-AACAACAATTAAAATGGCCGCT 839998 Query 9151 GATAGAGGCGCTTTTATTGATCAGAGTCAATCTTTTAACGTGTTCGTAGCCGCACCAACT 9210 || ||||| || ||||| || || |||||||| |||||| | || || | ||| | | Sbjct 839997 GACAGAGGAGCATTTATAGACCAAAGTCAATCGTTTAACATTCATGTGGCTGAACCTAAT 839938 Query 9211 TACG---CTTTGATGTCCAGCATTCATTATTTAACTTGGAAAATGGGTTTAAAAACAGGC 9267 || | |||| ||| ||||| | || | |||||||||||| | |||||||| Sbjct 839937 TATGGAAAATTGACGTC---GATTCACTTTTACGCATGGAAAATGGGTCTGAAAACAGGA 839881 Query 9268 ATGTACTATTTGCGCACAAAACCCGCCGCTGAACCTATCAAATTTACAGTT 9318 ||||| ||||| |||| ||| || |||||| | | || | || |||||| Sbjct 839880 ATGTATTATTTACGCATAAAGCCTGCCGCTAATGCAATTCAGTTCACAGTT 839830 Score = 132 bits (146), Expect = 5e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 || ||||||| || | |||||| | ||| || || |||||||| || |||||||||||| Sbjct 515406 TTACCTCCTCGAAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCG 515347 Query 134544 C-CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602 ||||| | | || || | ||||||||| || || ||||| | |||||||| || Sbjct 515346 GACAACG-TACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGG 515288 Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662 || ||||| ||||| ||||||||||| ||| || || | ||||| || | ||| Sbjct 515287 TGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTC 515228 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || | || ||||||||||| || | ||||| ||||| || |||||| Sbjct 515227 AACCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCATT 515176 >seq18715 Length=1377716 Score = 188 bits (208), Expect = 7e-43 Identities = 485/735 (66%), Gaps = 23/735 (3%) Strand=Plus/Plus Query 104632 CCCAATCTGTCGCACATGCTTTACGGATTTATACCGATTTGCGGTGGCGACGGCATCAAC 104691 || |||||| |||| | | ||||| || || || |||||||| ||||||||||||||| Sbjct 1370065 CCTAATCTGACGCATCTTTTGTACGGTTTCATTCCTATTTGCGGAGGCGACGGCATCAAC 1370124 Query 104692 GACGCTCTAAAGACCGTTCCGGGTAGTTTTGAAGCGTTGCAAAAATCGTGCGCTGGACGG 104751 ||| | ||||| | || ||||| |||| | ||| ||| ||| || || Sbjct 1370125 GACAGTTTAAAGGAGATCGAAGGCAGTTTCCAAGCTCTTCAACGATCATGCAGCGGCCGC 1370184 Query 104752 GAAAACTTCAAAGTGGCCATTCACGATCCGTGGGCGGCGGTGCAAAAACCGCAAAAAGGT 104811 ||| | |||||||| | |||||||| |||||||| || | || || || || || || Sbjct 1370185 GAAGATTTCAAAGTTTCTATTCACGACCCGTGGGCCGCTCTTCAGAAGCCACAGAAGGGA 1370244 Query 104812 GCCTCCGCTTGGAACGAACCGTACAAAGGCAATTTTGGTCAGATAATGGCCATCAAAAAA 104871 || | ||||| ||||| ||||||||||| ||||||||| | ||| | ||||| || Sbjct 1370245 CTGTCTTCCTGGAATGAACCATACAAAGGCAACTTTGGTCAGCTGATGTCTCTCAAACAA 1370304 Query 104872 GCCAATCCTCAATTGCGCGTATTGCCCTCGGTGGGCGGGTGGACGCTGTCCGATCCTTTT 104931 |||| ||| || | | | || || | || || ||||| || ||||||| || Sbjct 1370305 GCCAGGCCTGAACTTAAAATTCTACCTTCCATCGGAGGCTGGACTCTTGCCGATCCCTTC 1370364 Query 104932 TATCACATGCA-CGACGCTGAAAAACGTGCCACGTTTGTGGAGTCGGTGCGCGAATTTTT 104990 | || | || |||| || || | | || || || || ||| || ||| | Sbjct 1370365 T-TCTTCTTCACCGACAAAGAGAAGAGAGGTCGCTTCGTTGATTCTGTGAAAGATTTTCT 1370423 Query 104991 GTTGACTTGGAAATTCTTCGATGGCGTCGACATCGATTGGGAGTTTCCGGGCGGCAAAGG 105050 | || ||||| |||||||| || || || ||||||||||| || || ||||| || || Sbjct 1370424 TCTAACCTGGAAGTTCTTCGACGGTGTTGATATCGATTGGGAATTCCCTGGCGGTAAGGG 1370483 Query 105051 CGCCAACCCCAATCAAGGCGACGCGAA--AC-GCGATGCTCTCACGTACGTGTCTCTTTT 105107 || ||||| | | ||| | | || || | |||| | ||||| | | Sbjct 1370484 AGCTAACCCTGACCTAGGAAGCCCTAAGGACGGAGATGTT------TACGTTGAATTAAT 1370537 Query 105108 GAAAGAGTTGCGTTCGATGCTCGACGATTTGCAAAAACAAACC---AATCGCTCCGAGCG 105164 ||| || |||||| ||| | |||| | || | ||| || | ||| Sbjct 1370538 GAAGGAATTGCGTGAAATGTTGAACGACCTTTCTGAAGAGACCGGTAAGAAATACGA--- 1370594 Query 105165 TTTGTTGCTCACCAGCGCCATCAGCGCGGGCGACGACAAGATCGCCGTGGTGGATTACGG 105224 ||| || ||| || || || || || ||||| ||||| |||||| | Sbjct 1370595 ------GCTGACTTCCGCTATTAGTGCTGGATGGGATAAGATTCAAGTGGTCGATTACAG 1370648 Query 105225 TCACGCTCAAACCTACTTGGATTTGATATTTTTGATGAGTTACGATTTTAAAGGCGCCTG 105284 | ||||| | ||| ||||| || || | |||||||| ||||||||||||||||| Sbjct 1370649 CGAGGCTCAGAAATACATGGATCACATTTTCCTCATGAGTTATGATTTTAAAGGCGCCTG 1370708 Query 105285 GTCCAACACAAATCTCGGTCATCAGACGGCGTTGTACGCACCCGCGTGGAAACCCAACGA 105344 ||| || | |||||||||||||| || | ||||| || || ||||| ||||| || Sbjct 1370709 GTCTAATGACACCCTCGGTCATCAGACACCGCTTTACGCTCCTGCTTGGAACCCCAAGGA 1370768 Query 105345 ACGCTACACCACCGA 105359 | || ||||| || Sbjct 1370769 AACTTATACCACTGA 1370783 >seq61578 Length=3623949 Score = 100 bits (110), Expect = 3e-16 Identities = 167/239 (70%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || |||| ||| || | || | || || || || || || |||||||||||||| | | Sbjct 3474210 CCACCTCGGAGGCGGAGTACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGAC 3474151 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || ||| | || || ||||||| ||| || || ||||| | |||||| | || || Sbjct 3474150 AA-TGTGCGTCCATCTTCCAGCTGTTCGCCGGCGAAGATCAATCTCTGCTGGGCTGGGGG 3474092 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||| || || ||||| || || || || || | |||||| || | ||||| Sbjct 3474091 GATGCCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCCGAAGGCTCCAC 3474032 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTTTGT 134724 || | || ||||| || || || || || || |||||||| |||||||||| |||| Sbjct 3474031 CTCTAAGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAAATCTGCATTTTGTAATTGT 3473973 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || |||| ||| || | || | || || || || || || |||||||||||||| | | Sbjct 3474438 CCACCTCGGAGGCGGAGTACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGAC 3474379 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | || | || || ||||||||||| || || ||||| | |||||| || || || Sbjct 3474378 AATG-TGCGTCCATCTTCCAGCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGG 3474320 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||| || || ||||| || || || || || | |||||| || | ||| || Sbjct 3474319 GATGCCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCCGAGGGTTCAAC 3474260 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || |||||||| || || || || || || || || ||||| Sbjct 3474259 TTCTAATGTGATGGTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 3474212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504999217391240