Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq48925 601 5e-167 seq48068 127 3e-24 >seq48925 Length=1097090 Score = 601 bits (666), Expect = 5e-167 Identities = 1191/1752 (68%), Gaps = 32/1752 (2%) Strand=Plus/Plus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 || || ||| | |||| ||| ||||| || ||||||||||| | ||||| |||| || Sbjct 839855 GCAGGCTTTATGCGTAAATAATACATTCCTGTTTTCAGACCCATTTTCCATGCGTAAAAG 839914 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 || || || | ||| |||| | || || || | |||||| || | |||||||||| Sbjct 839915 TGAATCGACGTCAATTTTCCATAATTAGGTTCAGCCACATGAATGTTAAACGATTGACTT 839974 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGA--GGAATTT 68572 || || || || |||||||| || || |||||||| || | | |||| | | ||| | Sbjct 839975 TGGTCTATAAATGCTCCTCTGTCAGCGGCCATTTTAATTGT--TGTTTTAACTGAAATCT 840032 Query 68573 CCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAG--GCTCG-TATTTTGAATGG 68629 |||||| || ||| | | || | | ||||| | ||| | |||| |||||||||||| Sbjct 840033 CCCAAACTGTTTTATACAACTCTCTAATATCTTTTGGTATACGCTCAATATTTTGAATGG 840092 Query 68630 ATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTA 68689 | ||| | | ||| || | |||||| || || || | ||| || | | || |||| Sbjct 840093 AACCATTGTTGTGTATTATCAGATTCTTCATGTCTTCGTCCCATAAATCTGCCTGTGTTA 840152 Query 68690 AAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGT 68749 | |||| | | ||| | ||||| | || ||||| ||||| || || | | || Sbjct 840153 AGTCTCTCAATAAATGATGGTTAACAACCTGGAATTCTCCAGACAAAACACGTCTTTGGT 840212 Query 68750 AAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATG 68809 |||| || || | ||||| | || ||||||||||| | ||||| || || || | Sbjct 840213 AAATGTTTGATGTGAACGGTTCAAAGGACTCATTATTTCCTAAGATTTGTGCTGTAGACG 840272 Query 68810 CAGTTGGCATAGGTGCCACCAATA-AACT--ATTTCTAAGACCATGTGTTATGATTTTAT 68866 | || ||||| || || | ||| || | ||| | || |||||| | ||||||| Sbjct 840273 CTGTGGGCATTGGAGCTA---ATAGAAGTGAATTGCGGAGTCCATGTTTGGCAATTTTAT 840329 Query 68867 CTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTA 68926 |||| ||| ||| | ||| ||||||| ||| || ||| | || ||||| | Sbjct 840330 CTTTCAGAATAGACCAGTTCCAGAGATCAGTTGGAGTTTTATCCCACATGTCATATTGCA 840389 Query 68927 GAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTA 68986 || || | |||||| ||| | |||||| |||| ||| || | || || | Sbjct 840390 AGATGCCTTGGCTTGCAGGACTTCCTTCATATGTACTATAAACTCCCTCTTTTTGCGCCA 840449 Query 68987 GTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGAT 69046 |||||||||| || |||||||| |||||||| || |||||||| || | | || || | Sbjct 840450 GTTCACAACTGGCTTCTAATGCTCCGTAATATATGGTTTCGAAGATTTGTTGGTTAAGTT 840509 Query 69047 CTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCT 69106 ||||||| ||| || ||||| | | || | ||||| ||| || || || | Sbjct 840510 TAATTGCTTCTTCACTTTCATATGGAATGCGCATTAGTACAAATGTATCAGCTAACCCTT 840569 Query 69107 GAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGAT 69166 | || |||||||| |||||||| || | | | || ||| ||| ||||| || | || | Sbjct 840570 GCACTCCAATACCTATAGGTCTGTGACGCATGTTAGAATTTTTTGCTTCAGGCACTGGGT 840629 Query 69167 AATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTA 69226 || |||||| ||| |||||||||||||| || | | || || || || || | Sbjct 840630 AAAAATTAACATCAATAATTTTATTAAGGTTCTGTGTGATTATCTTTGTGACTTCTTTCA 840689 Query 69227 GTTTGAGAAAATCAAATCGTCCATCTA---TAACAAACATATTCAGTGCTACAGATGCTA 69283 || | ||| | || | |||| |||||||| |||||| || | || |||| Sbjct 840690 ACTTTATAAAGTTGTATGTTTTATCTTCATTAACAAACCTATTCAAAGCAATTGAAGCTA 840749 Query 69284 GATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTAC 69343 ||||||||| || || |||| | | |||| | || || || || | ||||| Sbjct 840750 AATTACAAACAGCAACTTCATCTGCTGAAGTGTATTCCACAATTTCGGTGCACAAATTAC 840809 Query 69344 TACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAA 69403 | ||||| || || || ||||||| |||||||| ||| | ||||| | || || || | Sbjct 840810 TGCATTTTATGGTGCCAAGATTTTTTTGATTACTTTTTCTATTACATGAATCTTTATACA 840869 Query 69404 GAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAG 69463 | || | || || || ||||| | || | ||| || || | |||||| | | || Sbjct 840870 GCATGTATGGTGTGCCCGTTTCCACTTGTGCTTCTATTATTGCTTTCCACAGTTCTTGAG 840929 Query 69464 CATTTATTACGGTCTTG--TAACGCTTCTCTTTT-----TCATATTGTGTATATAGCCGT 69516 | ||| |||| |||| ||| |||| ||||||| | ||| | | Sbjct 840930 CT-------CGGACTTGCTTAACAAATCTTTTTTCCTGTTCATATTTTTCATACAATGCT 840982 Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || ||||| ||||||||| |||| | | || || || |||| |||||||| | | Sbjct 840983 TCAAATTCTTCTCCCCAACAATCAGCAAGACCGGGGCAATCATGAGGACACATTAGACTC 841042 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAG 69636 |||| ||||| | | || ||||||||||||| ||| || ||||| | || ||| Sbjct 841043 CACATTTCATCTTTTTCTACACGTTTCATAAATAAATCTGGGATCCATAAGGCGTAAAAT 841102 Query 69637 AGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATA 69696 | ||||| | || ||||| || || ||||| ||||| ||||| | |||||| | | Sbjct 841103 AATTCTCTAGCTCGGACCTCTTCTTTGCCAGTATTCTTTTTCAGATCTAAAAACTCAAAA 841162 Query 69697 ATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCC 69756 | |||||| ||||| ||||| || || || || | |||||||||||||||| ||||| Sbjct 841163 ACATCAGAGTGCCAAGGTTCAAGGTAAATAGCAAATGCTCCCGGTCGTTTATTGCCTCCT 841222 Query 69757 TGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGAT 69816 || || | || ||||| || ||||| || ||||||| ||| || | | ||||| || Sbjct 841223 TGGTCGACATACCTGGCTGTATTATTGTACACTCTCAACATTGGCACGAGGCCATTGGAA 841282 Query 69817 TTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCT 69876 ||||| || |||| || || | ||| |||| | || | || | || ||| Sbjct 841283 ACTCCATTAGTACCAGCTATGTAGGTACCTTTTGCCCTGATGCAATGAACATGAAGGCCT 841342 Query 69877 ATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCT 69936 || || || || ||| ||||||| ||||| |||| | |||||||||||||||||| Sbjct 841343 ATACCACCAGCAGATTTTGAGATTAAGGCACATTGTTTTAGTGTGTCATATATACCCTCA 841402 Query 69937 ATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCC 69996 |||||||||||| |||| | ||| || || ||| | ||| | | |||| | Sbjct 841403 ATGCTATCATCTTTCATAGCTATAAGGAAGCAAGAAGATAATTGTGGTCTTGGAGTTGCT 841462 Query 69997 GCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTT 70056 || |||||||| ||| || ||||| || |||||||||| | || |||||| ||| Sbjct 841463 GCTGAGAATAATGTGGGACTGGCATGAGTAAAATATTTTTCAGATAACAAATTGTAAGTT 841522 Query 70057 TCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATATG 70115 ||||| ||||| || || || ||| | || ||||| |||| ||| ||||||| |||||| Sbjct 841523 TCAATGGCTGAATCAATGTCTTCACCG-TGGATTCCAATCGAGACTCGCATCAGCATATG 841581 Query 70116 CTGAGGTCGTTC 70127 |||||||| ||| Sbjct 841582 CTGAGGTCTTTC 841593 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/164 (73%), Gaps = 4/164 (2%) Strand=Plus/Plus Query 70345 TTTTTTGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCA 70404 || |||||||| ||||||||||| || || |||| ||| || ||||| | ||||| || Sbjct 842774 TTCTTTGTTTCTTTGTGTAAATTAGAGATTGCTAATCTTGCAGCTAGCACTGCATAATCC 842833 Query 70405 GGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTT 70464 ||||| | |||||| || || || |||| |||||||| | || ||||| | |||| Sbjct 842834 GGATGATCTGTAGTCATGGTGGCAGCAGTTTCTGCAGCTAAATTGTCCAATTCCACAGTT 842893 Query 70465 GTAACTCC--GTTATATAGCCCTTGAATAACTTTCATGGCTATT 70506 || ||||| || ||| | || |||||||||| | |||| Sbjct 842894 GTTACTCCCGAGTAAATACCACT--GATAACTTTCAATGTTATT 842935 >seq48068 Length=254185 Score = 127 bits (140), Expect = 3e-24 Identities = 135/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 39882 TAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCT 39941 ||| ||||||||| || |||| ||||| || || || | ||||| || || || | Sbjct 224871 TAATATATGTATCAATCAACAAGGAGTACATCTCAGAGTGTACATTTTCCATAGCGATTT 224812 Query 39942 GAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCA 40001 ||||||| ||||| | ||||||||| ||||| || ||| |||||| || | | Sbjct 224811 GAAATCCATAAAAGAACCTTGCTTCACCGATTTGAACTTCTTGTGAAAATCGCTCTACTA 224752 Query 40002 AATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATaaa 40059 |||| ||||| ||||| |||||| ||| |||||||||||||| |||||||||||||| Sbjct 224751 AATTCTCATTTACTATACCATCAGAAGCAGCAAAAAATGCCAACACATGTTTAATAAA 224694 Score = 102 bits (112), Expect = 1e-16 Identities = 156/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| ||| ||| | || || || || || |||||||||| || ||||| | Sbjct 225414 CCTCATCCCTAGAAATAAGCTCATTGCTGAAGGTCAGACCAGGCATTAAGCCGCGCTTCT 225355 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | ||| || || | ||||| |||||||||||||| ||||| || || ||||| | Sbjct 225354 TCAACCAGAAAATTGATGCAAAGCTACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGG 225295 Query 39759 CAACAAGTCTCTCTCCGTAACTTG-TATCATTATG--TATCCACTTCTGTGCCCAATCAG 39815 |||| | ||| || || | ||| | || | || ||||| | | ||||||| || | Sbjct 225294 CAACTATTCTTTCCCCAAAGTTTGCTGTCTTGCTGGCGATCCATTGCAGTGCCCAGTCTG 225235 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 | |||||||||||||| || | ||||| | ||||| || Sbjct 225234 CCTTCTTCTTTACACATGGTAAAGTTTCAACTGCATTGAA 225195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686366253670680