Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq48925 331 8e-86 seq18715 304 1e-77 seq61578 105 6e-18 >seq48925 Length=1097090 Score = 331 bits (366), Expect = 8e-86 Identities = 1104/1699 (65%), Gaps = 39/1699 (2%) Strand=Plus/Plus Query 130406 TTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCT 130465 || || || ||||| ||||| ||||| | ||| ||||| |||| ||||||||||| ||| Sbjct 839825 TTGTCAACTGTGAACTGAATTGCATTAGCGGCAGGCTTTATGCGTAAATAATACATTCCT 839884 Query 130466 GTTTTGAGTCCAATTTTGTGTCCATAATTGTGGATGCTGCACATTGTTTGGTAATTGGGT 130525 ||||| || || ||||| | | ||| ||| || || | || ||||| ||| Sbjct 839885 GTTTTCAGACCCATTTTCCATGCGTAAAAGTGAATCGACGTCAATTTTCCATAATTAGGT 839944 Query 130526 TGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAGCC 130585 | ||||| ||||| | |||||| ||| || ||||| || || ||||| || ||| Sbjct 839945 TCAGCCACATGAATGTTAAACGATTGACTTTGGTCTATAAATGCTCCTCTGTCAGCGGCC 840004 Query 130586 ATGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATGTGT 130645 || | | | |||||| | ||||||||| | || || || | || ||||| | | Sbjct 840005 ATTTTAATTGTTGTTTTAACTGAAATCTCCCAAACTGTTTTATACAACTCTCTAATATCT 840064 Query 130646 TTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTGCGCATA 130705 || ||||| ||| |||| ||||| | ||| |||||| ||| || || ||| Sbjct 840065 TTTGGTATACGCTCAATATTTTGAATGGAACCATTGTTGTGTATTATCAGATTCTTCATG 840124 Query 130706 CTTTTATCGTACAATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAATGATTTGA 130765 || || | || | |||| | ||| | | ||||||| |||| | || Sbjct 840125 TCTTCGTCCCATAAATCTGCCTGTGTTAAGTCTCTCAATAAATGATGGTTAACAACCTGG 840184 Query 130766 AAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTCG 130825 || || |||| || || ||||| ||||||||| ||||||||||||||||| || Sbjct 840185 AATTCTCCAGACAAAACACGTCTTTGGTAAATGTTTGATGTGAACGGTTCAAAGGACTCA 840244 Query 130826 TTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGA---GAA 130882 || || || || ||||||||||||| || |||||||| || |||||||| ||| Sbjct 840245 TTATTTCCTAAGATTTGTGCTGTAGACGCTGTGGGCAT---TGGAGCTAATAGAAGTGAA 840301 Query 130883 TTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTA 130942 || || || || || | | ||||| |||| | ||| | ||| ||| || Sbjct 840302 TTGCGGAGTCCATGTTTGGCAATTTTATCTTTCAGAATAGACCAGTTCCAGAGATCAGTT 840361 Query 130943 GGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGATTCG 131002 || | || | |||||| ||| |||| | ||||||| || || ||||| ||| Sbjct 840362 GGAGTT---TTATCCCACATGTCATATTGCAAGATGCCTTGGCTTGCAGGACTTCCTTCA 840418 Query 131003 AACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAA 131062 | | || | ||| || | ||||| || || ||||| || ||||||||| Sbjct 840419 TATGTACTATAAACTCCCTCTTTTTGCGCCAGTTCACAACTGGCTTCTAATGCTCCGTAA 840478 Query 131063 TAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAAT 131122 || ||||||||| ||||||| || | || | |||| | || || || |||| Sbjct 840479 TATATGGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCTTCTTCACTTTCATATGGAATG 840538 Query 131123 TTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATGTTTT 131182 ||||| | ||| | || || | || || | |||| || | ||||| || Sbjct 840539 CGCATTAGTACAAATGTATCAGCTAACCCTTGCACTCCAATACCTATAGGTCTGTGACGC 840598 Query 131183 AAATTACA--TTTACGCGAACATTCGGTGGGATAAAGGTTAATGTCAATTATTTTGTTTA 131240 | ||| | ||| || || | |||| |||| |||| ||||| ||||| || | Sbjct 840599 ATGTTAGAATTTTTTGCTT-CAGGCACTGGG-TAAAAATTAACATCAATAATTTTATTAA 840656 Query 131241 AATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGCCAGTTT 131300 || | | || | |||||| |||||| || || | | || | || Sbjct 840657 GGTTCTGTGTGATTATCTTTGTGACTTCTTTCAACTTTATAAAGTTGTATGTTTTATCTT 840716 Query 131301 CGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTCGTCAT 131360 | || ||||| ||| | | ||||| || | ||||||||| || ||| || | Sbjct 840717 CA---TTAACAAACCTATTCAAAGCAATTGAAGCTAAATTACAAACAGCAACTTCATC-T 840772 Query 131361 AATCGCAAT--ACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAATT 131418 | | | | | | |||||||||| |||||||||||||| ||||||||||| | ||| Sbjct 840773 GCT-GAAGTGTATTCCACAATTTCGGTGCACAAATTACTGCATTTTATGGTGCCAAGATT 840831 Query 131419 TTGTTGATTGCTTTTAGCATTCACATGG-TCCTTGTACATCATGTAGGGCGTGCCCGTTT 131477 || |||||| ||||| ||| ||||| || || |||| |||||| || |||||||||| Sbjct 840832 TTTTTGATTACTTTTTCTATT-ACATGAATCTTTATACAGCATGTATGGTGTGCCCGTTT 840890 Query 131478 CGACTTGAGTTTCAATAATGTATCGAAAGAGTTTTCGAGCAGACAATTGAT----ATTTG 131533 | ||||| | ||| || || | | |||| | |||| | ||| | | | Sbjct 840891 CCACTTGTGCTTCTATTATTGCTTTCCACAGTTCTTGAGCTCGGACTTGCTTAACAAATC 840950 Query 131534 TATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCA-AACGAACT 131592 | || || | ||| || ||||| ||||| | |||||| | || || ||| | | Sbjct 840951 TTTTTTCC----TGTTCATATTTTTCATACAATGCTTCAAATTCTTCTCCCCAACAATCA 841006 Query 131593 GTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCG 131652 | | | | ||| || || ||||||||||| ||||| | | | ||| || || Sbjct 841007 G-CAAGACCGGGGCAATCATGAGGACACATTAGACTCCACATTTCATCTTTTTCTACACG 841065 Query 131653 CTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTC 131712 |||||||| ||||| || | |||||| ||||| || | ||||||||| |||||| Sbjct 841066 TTTCATAAATAAATCTGGGATCCATAAGGCGTAAAATAATTCTCTAGCTCGGACCTCTTC 841125 Query 131713 TGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAA 131772 | | || || | ||||||| || |||||| || |||| || | ||||| ||||| | Sbjct 841126 TTTGCCAGTATTCTTTTTCAGATCTAAAAACTCAAAAACATCAGAGTGCCAAGGTTCAAG 841185 Query 131773 ATACACTGCCATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAACCATGTT 131829 || | || | ||| || || ||| || ||||| | |||| | | | || Sbjct 841186 GTAAATAGCAAATGCTCCCGGTCGTTTATTGCCTCCTTGGTCGACATACCTGGCTGTATT 841245 Query 131830 GTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTA 131889 ||||| || | |||||| ||| | | || |||| |||||| || | ||||| Sbjct 841246 ATTGTACACTCTCAACATTGGCACGAGGCCATTGGAAACTCCATTAGTACCAGCTATGTA 841305 Query 131890 GCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGAT 131949 | | || || || ||||| ||||| | || || ||||| || | |||| ||||| Sbjct 841306 GGTACCTTTTGCCCTGATGCAATGAACATGAAGGCCTATACCACCAGCAGATTTTGAGAT 841365 Query 131950 TAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGAC 132009 || || |||| |||| |||| ||| ||||| || | ||| || | || | | Sbjct 841366 TAAGGCACATTGTTTTAGTGTGTCATATATACCCTCAATGCTATCATCTTTCATAGCTAT 841425 Query 132010 TAAAAAGCAAGAGGACAACTGT--TGGTGAAATGTGCCGGCTGAAAACAATGTGGGGCTG 132067 | |||||||| || || ||| | || | || | ||||| || |||||||| ||| Sbjct 841426 AAGGAAGCAAGAAGATAATTGTGGTCTTGGA--GTTGCTGCTGAGAATAATGTGGGACTG 841483 Query 132068 GCGTGTGTAAAAAGttttt 132086 || || |||||| ||||| Sbjct 841484 GCATGAGTAAAATATTTTT 841502 >seq18715 Length=1377716 Score = 304 bits (336), Expect = 1e-77 Identities = 756/1128 (67%), Gaps = 35/1128 (3%) Strand=Plus/Minus Query 49557 TTTACAATTTGCCTGTAATCCACTACGCCGTCCTCCCAAGTGCCCACGACAGGACCACCG 49616 ||| | |||| || ||||| ||||| ||||| | |||||| || |||||| ||| Sbjct 1370972 TTTGCTATTTCTCTATAATCAACTACACCGTCTTGCCAAGTACCTTTGACAGGTCCAGTC 1370913 Query 49617 GCAACGCCTGTGAACGGGTTGTCATCTGTGTAATCGTCGACTGCGGTCCAACCGCGGCCG 49676 || ||| ||||| || |||| || | ||| | || || ||||||| || || ||| Sbjct 1370912 GCGTTGCCAGTGAATGGATTGTTATTTTCGTAGTTGTGAACCCCGGTCCAGCCTCGTCCG 1370853 Query 49677 TACATTGCCACTCCGATGACAATTTTTTCGCTAGCCACGTT--CTGTTTGAGCA-GC--- 49730 ||||| || || || | ||||| || | ||| ||| | ||||||| || Sbjct 1370852 TACATAGCTACACCCACCACAATCTTCT---TAGG---GTTGACGCCTTGAGCAAGCAAA 1370799 Query 49731 TCGCGAACAGCGGTGTCAGTGGTGTACAGTTCGCCGGCGTTCCACAGC-GGCGCATACAA 49789 | ||| | ||||||||| || ||| || |||||| ||| || || || | Sbjct 1370798 TATTTCACACCAAAGTCAGTGGTATAAGTTTCCTTGGGGTTCCA-AGCAGGAGCGTAAAG 1370740 Query 49790 ATTGGTTTGGTAACCTAAATCGACATTGGACCAAGCACCTTTAAAATCGTACGACATTAG 49849 || || | ||| | | |||| ||||| || ||||||||||| || ||| || Sbjct 1370739 CGGTGTCTGATGACCGAGGGTGTCATTAGACCAGGCGCCTTTAAAATCATAACTCATGAG 1370680 Query 49850 AAAAATTTGATCTAAATATTGCTGGGCGCTAGCA-TAGTCGACCAACTCGATTTTGTCAT 49908 ||||| ||||| | |||| ||| || || || || ||||||| | || || || Sbjct 1370679 GAAAATGTGATCCATGTATTTCTGAGC-CTCGCTGTAATCGACCACTTGAATCTTATCCC 1370621 Query 49909 AGCCGGCGCCAATAGCTGAAGTCAAAAGCAGTTTACGACCGGTCTGCTCTTGCACTTCGT 49968 | || || | |||||| ||||||| ||| |||||||| || | |||| Sbjct 1370620 ATCCAGCACTAATAGCGGAAGTCAGCTCGTATTTCTTACCGGTCTCTTCAGAAAGGTCGT 1370561 Query 49969 CTAACATTTTGCGCAACTCTTTAAGCAAAATCACGTACGTGGCACCGTCATTGTCAACAT 50028 ||||||| ||||| || || | || ||||| | ||||| || | Sbjct 1370560 TCAACATTTCACGCAATTCCTTCATTAATTCAACGTAAACATCTCCGTCCTT----AGGG 1370505 Query 50029 CTCCCAAAATC-GGGTTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCAATGTCGACGCCG 50087 || || | || ||||| || || || ||||| || || ||||| || || || || ||| Sbjct 1370504 CTTCCTAGGTCAGGGTTAGCTCCCTTACCGCCAGGGAATTCCCAATCGATATCAACACCG 1370445 Query 50088 TCGAAAAATTTCCAAACTTGTAAAAATTCGCGAACCGACTCCACAAAC--ACTTTTCTGA 50145 ||||| || ||||| | | | ||| || || || || || || || | ||| Sbjct 1370444 TCGAAGAACTTCCAGGTTAGAAGAAAATCTTTCACAGAATCAACGAAGCGACCTCTCT-- 1370387 Query 50146 TCGCGTCATCGTGCATGAAAAAGAATGGATCCGACAGAGTCCAACCGCCGATCGAAGGCA 50205 || | | ||| | ||| ||||| ||||| | |||||||| || ||||| ||||| | Sbjct 1370386 TCTCTTTGTCGGTGAAGAAGAAGAAGGGATCGGCAAGAGTCCAGCCTCCGATGGAAGGTA 1370327 Query 50206 AAATTTTAATGTGCGGATGCGCCTTTTTGACGGCCATTAACTGACCAAAATTGCCTTTAT 50265 |||||||| | || || | ||||| | ||| | ||||||||| |||||||| | Sbjct 1370326 GAATTTTAAGTTCAGGCCTGGCTTGTTTGAGAGACATCAGCTGACCAAAGTTGCCTTTGT 1370267 Query 50266 ACGGTTCGTTCCACGCGGACACTCCTTTTTGCGGCTTCTGTATGGCGGCCCAAGGGTCGT 50325 | ||||| ||||| | |||| ||| || || |||||||| | |||||||| ||||||| Sbjct 1370266 ATGGTTCATTCCAGGAAGACAGTCCCTTCTGTGGCTTCTGAAGAGCGGCCCACGGGTCGT 1370207 Query 50326 GTATGGACACTTTAAAATCTTCCCGTCCCGCACACGATCGCTGCAACGCCTCGAAACTGC 50385 | || || ||||| |||||||| || || || ||||| || | || | |||||||| Sbjct 1370206 GAATAGAAACTTTGAAATCTTCGCGGCCGCTGCATGATCGTTGAAGAGCTTGGAAACTGC 1370147 Query 50386 CGGTGATGGTTTTGAGGCTGTCGTTGATACCGTCGCCGCCGCAAATGGGAATGAAACCGT 50445 | ||| || | ||||||||||| |||||||| |||||||| ||||||||||||| Sbjct 1370146 CTTCGATCTCCTTTAAACTGTCGTTGATGCCGTCGCCTCCGCAAATAGGAATGAAACCGT 1370087 Query 50446 ACAACAGATGAGTTAAATTTGGCACAGGCACTTTGTCCGCTGGAAAGTTGCGACCGTATA 50505 |||| ||||| || | ||| || | || || || |||| || || | ||| | Sbjct 1370086 ACAAAAGATGCGTCAGATTAGGAATCGGTACACGATCGACTGGGAATTTTCTTGGGTAAA 1370027 Query 50506 CTCCCCACTCAACAAAGTATGCCGCCACGACTTTATCCGTGACACCTTCTTGCAAT---T 50562 | ||||| ||||||||||| || | || ||||| ||| ||| || | || ||| | Sbjct 1370026 CACCCCATTCAACAAAGTACGCTCCGACAACTTT-TCC-TGA-ACTCTGTTTGAATGGCT 1369970 Query 50563 TGTTGTTCTCTTGCCA--TACGTACGGTAGCGGACTCAAATGGGCGCCGTCGGTATCGGC 50620 | || |||||| ||| |||| | ||| | |||| ||||| ||||| || Sbjct 1369969 TATTCTTCTCT--CCAAGGGTGTACATCAATGGAGGTAGATGGCTACCGTCAGTATCAGC 1369912 Query 50621 CACTATTACCGGAGTGGGCGCGCTTGCCGAACAGCCGTCGGAGTTGCA 50668 |||| | | || ||| | || | ||||| ||||| |||||||| Sbjct 1369911 TACTACAATCTCTGTAGGCTCACTGGAAGAACATCCGTCAGAGTTGCA 1369864 >seq61578 Length=3623949 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||| ||||| | || || ||||| ||||| |||||||| || |||| | ||||| Sbjct 3474421 TACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGACAATGTGCGTCCATCTTC 3474362 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 |||||||| |||||| | || | | ||| || || || || | ||||| || || Sbjct 3474361 CAGCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTG 3474302 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||||| || | |||| | ||||| | || ||||||||||| || || | ||| Sbjct 3474301 GATCTTGGCCTTAACATTTTCAATTGTGTCCGAGGGTTCAACTTCTAATGTGATGGTTTT 3474242 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| |||| || || |||||||| |||||| Sbjct 3474241 GCCAGTCAAGGTCTTGACAAAGATCTGCATA 3474211 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||| ||||| | || || ||||| ||||| |||||||| || |||| | ||||| Sbjct 3474649 TACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGACAATGTGCGTCCATCTTC 3474590 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | |||||| |||||| | || | | || || || || || | ||||| || || Sbjct 3474589 CAACTGTTTGCCGGCGAAGATCAATCTTTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTG 3474530 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||||| || | |||| | ||||| | || ||||||||||| || || | || Sbjct 3474529 GATCTTGGCCTTAACATTTTCAATTGTGTCCGAGGGTTCAACTTCTAATGTGATGGTCTT 3474470 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| |||| || || |||||||| |||||| Sbjct 3474469 GCCAGTCAAGGTCTTGACAAAGATCTGCATA 3474439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424607161603944