Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq48925 122 1e-22 seq53576 87.8 2e-12 >seq48925 Length=1097090 Score = 122 bits (134), Expect = 1e-22 Identities = 464/720 (64%), Gaps = 19/720 (3%) Strand=Plus/Plus Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765 |||| ||||||| |||| | ||||||||| | |||||||| || ||||||||||| || | Sbjct 840210 GGTAAATGTTTGATGTGAACGGTTCAAAGGACTCATTATTTCCTAAGATTTGTGCTGTAG 840269 Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825 | ||||| |||||||| || | | ||| || || || || | | || | Sbjct 840270 ACGCTGTGGGCATTGGAGCTAATAGAAGTGAATTGCGGAGTCCATGTTTGGCAATTTTAT 840329 Query 110826 CCTTGAGAACATCCCAGT--CGTAGTTGAGCTTG-GTTTCACCTTCCCACATGTCAAACT 110882 | || |||| | ||||| | || | || | | |||| | |||||||||||| | | Sbjct 840330 CTTTCAGAATAGACCAGTTCCAGAGATCAGTTGGAGTTTTA---TCCCACATGTCATATT 840386 Query 110883 GAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG 110942 | | | |||||| || ||| || ||| | || ||| || | || | Sbjct 840387 GCAAGATGCCTTGGCTTGCAGGACTTCCTTCATATGTACTATAAACTCCCTCTTTTTGCG 840446 Query 110943 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 111002 ||| |||||| || || || | | | ||| ||| |||||||| ||||| | || | Sbjct 840447 CCAGTTCACAACTGGCTTCTAATGCTCCGTAATATATGGTTTCGAAGATTTGTTGGTTAA 840506 Query 111003 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGAC 111062 | | ||||| || ||| ||| ||| | | |||| ||| || | | Sbjct 840507 GTTTAATTGCTTCTTCACTTTCATATGGAATGCGCATTAGTACAAATGTATCAGCTAACC 840566 Query 111063 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA--CTTTCGC-GCAGTCTCAA 111119 |||| || || | ||| ||||||||||| ||||| ||||| ||| || ||| | | Sbjct 840567 CTTGCACTCCAATACCTATAGGTCTGTGACGCATGTTAGAATTTTTTGCTTCAGGC---A 840623 Query 111120 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 111179 | || |||||||| ||||| | | || || || | || | |||||||||| || Sbjct 840624 CTGGGTAAAAATTAACATCAATAATTTTATTAAGGTTCTGTGTGATTATCTTTGTGACTT 840683 Query 111180 CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGA 111239 | | | ||| | | | | || | |||||||| ||| || | | || | Sbjct 840684 CTTTCAACTTTATAAAGTTGTATGT---TTTATCTTCATTAACAAACCTATTCAAAGCAA 840740 Query 111240 TTGATGCCAAATTGCAAACAGCCGTCTCATC--CTTATCTGTGTACTCTAAAATTTCTGT 111297 |||| || ||||| |||||||| ||||| || | ||||| || | |||||| || Sbjct 840741 TTGAAGCTAAATTACAAACAGCAACTTCATCTGCTGA--AGTGTATTCCACAATTTCGGT 840798 Query 111298 ACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGC 111357 || || || | || || || || | ||| ||||| ||||| || | || || | Sbjct 840799 GCACAAATTACTGCATTTTATGGTGCCAAGATTTTTTTGATTACTTTTTCTATTACATGA 840858 Query 111358 ATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 ||| || || |||||||| || || ||||| ||| |||| || | || || ||||| Sbjct 840859 ATCTTTATACAGCATGTATGGTGTGCCCGTTTCCACTTGTGCTTCTATTATTGCTTTCCA 840918 >seq53576 Length=1474168 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 11624 CCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCA 11683 || ||||||||||| |||||||| || | ||| || || || || || || || | Sbjct 321197 CCAACCGCATCAATTTCATCAATAAACAAAATGCAAGGAGCATGTTTACGTGCCATAGAA 321138 Query 11684 AAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCA 11743 || | ||| ||||| || | ||| || ||||||||||| |||| ||| | | || Sbjct 321137 AACATATCACGAACTCTAGAAGGACCAACGCCAACAAACATTTCCAAAAATTCAGAACCA 321078 Query 11744 GAGCACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 11802 || ||| | ||||| |||||||||| |||||| || | ||| || || | ||||| Sbjct 321077 GA-CACCGTAATGAAGGGGACATTTGCTTCACCAGCTGTTGCTTTAGCCAGTAAAGTCTT 321019 Query 11803 TCCCGTACCTGG 11814 ||| ||||| || Sbjct 321018 TCCAGTACCAGG 321007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627535956775200