Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq29550 98.7 1e-15 >seq29550 Length=670265 Score = 98.7 bits (108), Expect = 1e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 117303 GAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATT 117362 ||||||| || ||||| | ||| |||| |||||||||||| ||| || ||||| || | Sbjct 342603 GAGTGAATATATAACGGGGGCTGGCAGAGTCCTTGCCACCACAAAGTCGTGTACCAAACT 342544 Query 117363 GTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 | || | |||||||| ||||| | ||||||| |||||| |||| || |||| ||| | Sbjct 342543 GACCGCGCGGCTCCAGCAGGTTGATATTGTTGGAGCCCACGTAGTTCTGCGCCAGGTTCA 342484 Query 117423 CAATCGT 117429 | ||||| Sbjct 342483 CTATCGT 342477 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || |||| |||||| | ||||||||||| || || || |||||||| Sbjct 342601 GTGAATATATAACGGGGGCTGGCAGAGTCCTTGCCACCACAAAGTCGTGTACCAAACTGA 342542 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || ||||| || ||||||| ||||||| ||||||| | ||||| |||| ||||| Sbjct 342541 CCGCGCGGCTCCAGCAGGTTGATATTGTTGGAGCCCACGTAGTTCTGCGCCAGGTTCACT 342482 Query 152149 ATCGT 152153 ||||| Sbjct 342481 ATCGT 342477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546783788282600