Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq18715 277 2e-69 seq61578 145 7e-30 seq48925 122 8e-23 seq63174 102 7e-17 seq3073 84.2 2e-11 >seq18715 Length=1377716 Score = 277 bits (306), Expect = 2e-69 Identities = 663/993 (67%), Gaps = 35/993 (4%) Strand=Plus/Minus Query 53584 ATTTTTCGGTAATCAACGACTCCGTCTTCCCATGTGCCTGTAACAGGGCCAGTTGCCACA 53643 |||| || |||||||| || ||||||| ||| || ||| | ||||| ||||| || Sbjct 1370966 ATTTCTCTATAATCAACTACACCGTCTTGCCAAGTACCTTTGACAGGTCCAGTCGCGTTG 1370907 Query 53644 CCGGTGAACGGATTGTCATCGCGGTAGCCGCTCACTCCAGTCCAACCGCGCCCGTACATC 53703 || ||||| ||||||| || |||| | || || ||||| || || |||||||| Sbjct 1370906 CCAGTGAATGGATTGTTATTTTCGTAGTTGTGAACCCCGGTCCAGCCTCGTCCGTACATA 1370847 Query 53704 GCCACTCCGAGAACAATTTT-TTCCTGTTGAACTTTTTGTTCGAGCAACGCGCGCACGGC 53762 || || || | ||||| || || ||||| | ||| | ||||| ||| | Sbjct 1370846 GCTACACCCACCACAATCTTCTTAGGGTTGA-CGCCTTGAGCAAGCAAATATTTCACACC 1370788 Query 53763 AACATCGGCCGTGTAATGCTCGCTGGGAGACCAAACCGGCGCGTAAATCGCCGTTTGATG 53822 || || | || ||| || |||| |||| | || ||||||| || || ||||| Sbjct 1370787 AAAGTCAGTGGTATAAGTTTCCTTGGGGTTCCAAGCAGGAGCGTAAAGCGGTGTCTGATG 1370728 Query 53823 TCCCAAATCGGTGT---TTGACCAAGCGCCTTTAAAATCATACGACATTaaaaaaaTTCT 53879 || | ||||| | ||||| ||||||||||||||||| ||| | ||||| Sbjct 1370727 ACCGAG---GGTGTCATTAGACCAGGCGCCTTTAAAATCATAACTCATGAGGAAAATGTG 1370671 Query 53880 GTCCAGGTATTGTTGGGCGTCGCGATAGTTGACGACCGCAATTTTATCATTGCCTGCACT 53939 |||| ||||| || || |||| || | ||| || ||| ||||| || ||||| Sbjct 1370670 ATCCATGTATTTCTGAGCCTCGCTGTAATCGACCACTTGAATCTTATCCCATCCAGCACT 1370611 Query 53940 GATTGCGCTAGTCAACTCGAACTTTCGT-CCAGTTTCCAATTCCAATTGATC---CAACA 53995 || ||| ||||| |||| | |||| | || || || ||| | | || ||||| Sbjct 1370610 AATAGCGGAAGTCAGCTCGTA-TTTCTTACCGGTCTC---TTCAGAAAGGTCGTTCAACA 1370555 Query 53996 TTTGTCGCAACTCTTTTAACAACACCACATACGTTAAACTATCT---TTTTGAGGATCGC 54052 ||| ||||| || || | || | || || ||| |||| | | ||| | Sbjct 1370554 TTTCACGCAATTCCTTCATTAATTCAACGTA-----AAC-ATCTCCGTCCTTAGGGCTTC 1370501 Query 54053 CCACGGACGGATTGGCACCGTTTCCGCCAGGAAACTCCCAATCGACGTCGACACCATCAA 54112 | | | || || || || || |||||||| || |||||||||| || ||||| || | Sbjct 1370500 CTAGGTCAGGGTTAGCTCCCTTACCGCCAGGGAATTCCCAATCGATATCAACACCGTCGA 1370441 Query 54113 AAAATTTCCACGTCAATAGGAATTCGCGCACGGAATCCACAAA-----CACTTTGCGTTT 54167 | || ||||| || | || || || ||| ||||| || || | || | | || Sbjct 1370440 AGAACTTCCAGGTTAGAAGAAAATCTTTCACAGAATCAACGAAGCGACCTCTCTTCTCTT 1370381 Query 54168 GGAAGAATCGTGGAAATGGTAAAACGGATCCGATAACGTCCAACCGCCGATTGACGGTAA 54227 | ||| ||| | | || ||||| | | ||||| || ||||| || |||| Sbjct 1370380 TG-----TCGGTGAAGAAGAAGAAGGGATCGGCAAGAGTCCAGCCTCCGATGGAAGGTAG 1370326 Query 54228 TACTTTGACGTTGGGATTCGCTTTTTTCACGGCCATAATCTGTCCAAAATTGCCTTTATA 54287 | ||| | | || | |||| ||| | | ||| | ||| ||||| |||||||| || Sbjct 1370325 AATTTTAAGTTCAGGCCTGGCTTGTTTGAGAGACATCAGCTGACCAAAGTTGCCTTTGTA 1370266 Query 54288 CGGTTCGTTCCAGGCGGAGACGCCTTTTTGCGGTTTTTGCACCGCCGCCCAAGGATCATG 54347 ||||| ||||||| || | || || || || || || | || ||||| || || || Sbjct 1370265 TGGTTCATTCCAGGAAGACAGTCCCTTCTGTGGCTTCTGAAGAGCGGCCCACGGGTCGTG 1370206 Query 54348 GATGGCTACTTTAAAATCCGACCGGCCAGCGCAAGATCTTTGTAGAGCTTCAAAACTGCC 54407 || | ||||| ||||| ||||| ||| |||| ||| ||||||| |||||||| Sbjct 1370205 AATAGAAACTTTGAAATCTTCGCGGCCGCTGCATGATCGTTGAAGAGCTTGGAAACTGCC 1370146 Query 54408 CGGTATAGTTTTTAAACTGTCATTTATTCCGTCGCCGCCGCAAATTGGCACAAAACCGTA 54467 || ||||||||||| || || |||||||| |||||||| || | |||||||| Sbjct 1370145 TTCGATCTCCTTTAAACTGTCGTTGATGCCGTCGCCTCCGCAAATAGGAATGAAACCGTA 1370086 Query 54468 CAAAAGATGCGTCAAATTAGGCACGGGCACTTTGTCCATTGGAAAATTTCGTCCGTACAC 54527 |||||||||||||| |||||| | || || || | ||| || |||| | ||| || Sbjct 1370085 CAAAAGATGCGTCAGATTAGGAATCGGTACACGATCGACTGGGAATTTTCTTGGGTAAAC 1370026 Query 54528 TCCCCATTCTACAAAATAGGCGGCCACAACTTT 54560 |||||||| ||||| || || | |||||||| Sbjct 1370025 ACCCCATTCAACAAAGTACGCTCCGACAACTTT 1369993 >seq61578 Length=3623949 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| ||||||| || ||||| ||||| || Sbjct 3475747 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACTATTACCCTCGAAGTTGAACCCTCA 3475806 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || ||| ||||| |||||||||||||| || || || || || Sbjct 3475807 GACACTATCGAGAACGTTAAAGCTAAAATCCAAGACAAAGAAGGTATCCCCCCAGACCAG 3475866 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | |||||||||||| ||||| || || || | || || || ||| Sbjct 3475867 CAACGTCTTATCTTCGCCGGCAAACAGTTGGAGGATGGTCGTACACTATCAGACTATAAC 3475926 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| |||||||| | || ||||| | ||| | || ||||| || Sbjct 3475927 ATCCAAAAAGAGTCGACACTCCACTTGGTACTCCGTCTCCGTGGTGGTAT 3475976 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| | || || ||| | || || || ||||| ||||| || Sbjct 3475975 ATGCAGATCTTCGTCAAGACTTTAACAGGAAAGACCATCACCCTCGAAGTTGAACCTTCA 3476034 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || ||| ||||| |||||||||||||| || || || || || Sbjct 3476035 GACACTATGGAGAACGTTAAAGCTAAAATCCAAGACAAAGAAGGTATCCCCCCAGACCAG 3476094 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | |||||||||||| ||||| || || || | |||||||||||| Sbjct 3476095 CAACGTCTTATCTTCGCCGGCAAACAGTTGGAGGATGGTCGTACACTCTCCGATTACAAC 3476154 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || |||||||| || | || ||||| | ||| | || || ||| Sbjct 3476155 ATCCAGAAGGAGTCTACTCTTCACTTGGTGCTCCGTCTTCGCGGCGGC 3476202 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| |||||| | || || | ||||| ||||| || Sbjct 3474440 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACCATCACATTAGAAGTTGAACCCTCG 3474499 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || |||||||| || ||||| || || || || Sbjct 3474500 GACACAATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 3474559 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | |||||||||||| |||||||| | || | || || |||||| Sbjct 3474560 CAAAGATTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGCACATTGTCTGACTACAAC 3474619 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || ||||| ||| | ||||| || | || | || ||||| || Sbjct 3474620 ATTCAGAAAGAGTCAACCCTGCATTTAGTACTCCGCCTCCGAGGTGGTAT 3474669 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| ||||| | || || | ||||| ||||| || Sbjct 3474212 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAAACCATCACATTAGAAGTTGAACCCTCG 3474271 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || |||||||| || ||||| || || || || Sbjct 3474272 GACACAATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 3474331 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | |||||||||||| ||||||| | || | || || |||||| Sbjct 3474332 CAGAGATTGATCTTCGCCGGCAAACAGCTGGAAGATGGACGCACATTGTCTGACTACAAC 3474391 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || ||||| ||| | ||||| || | || | || ||||| || Sbjct 3474392 ATTCAGAAAGAGTCAACCCTGCATTTAGTACTCCGCCTCCGAGGTGGTAT 3474441 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| | || || | || ||||| || || Sbjct 3473984 ATGCAGATTTTCGTGAAGACCTTGACGGGCAAGACCATCACCTTAGAGGTGGAGCCTTCG 3474043 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || |||||||| || ||||| || || | || Sbjct 3474044 GACACAATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGCCCAG 3474103 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||||| |||| ||||||| | || | || || |||||| Sbjct 3474104 CAGAGATTGATCTTCGCCGGCGAACAGCTGGAAGATGGACGCACATTGTCTGACTACAAC 3474163 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || ||||| ||| | ||||| || | || | || ||||| || Sbjct 3474164 ATTCAGAAAGAGTCAACCCTGCATTTAGTACTCCGCCTCCGAGGTGGTAT 3474213 >seq48925 Length=1097090 Score = 122 bits (134), Expect = 8e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || |||||||| || || || || | || || | || || ||| | || Sbjct 515177 ATGCAGATCTTCGTAAAAACCCTCACGGGTAAAACCATAACGTTAGAGGTTGAAGCCTCT 515236 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| ||||||||||||||||| ||||| ||||| ||||| Sbjct 515237 GACACTATCGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCACCAGATCAG 515296 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || | || || | |||||||||||| || ||||| | || |||| ||||| ||||| Sbjct 515297 CAAAGATTGATCTTCGCCGGCAAACAGTTAGAAGA-TGGACGTACGTTGTCCGACTACAA 515355 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 ||| || ||||| || || | || ||||| ||| Sbjct 515356 CATCCAGAAGGAATCAACACTTCACTTGGTGTTG 515389 >seq63174 Length=598887 Score = 102 bits (112), Expect = 7e-17 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 135474 TGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCA 135533 ||||||| || || |||| |||| | ||||||||| ||||| || || ||||||| Sbjct 163850 TGTGGAATGCTGCGCAACTGCAGTTGGTCAAAGAAGGCAAGATGCATGGCTTCATGCGCA 163791 Query 135534 TGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACG 135593 ||||||||| ||| || || | |||||| | || | || | || || || || | | Sbjct 163790 TGTATTGGGGAAAGAAAATTCTAGAATGGACGCCAACTCCCGAGGATGCTCTTAAATATG 163731 Query 135594 CAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGT 135652 ||||| ||| |||||| | |||||| ||||||| | ||| | ||||| || | |||| Sbjct 163730 CAATACATTTAAATGATCATTACAGTATAGATGGCAGAGATCCTAATGGATATGCAGGT 163672 >seq3073 Length=250685 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 122182 TGATCTCCCATCATTGGCACACCCACTAGCGGTACAAGTGCTTCGATAGCTTCATCGGTA 122241 ||||||||||||||||| | || |||||||||||| ||| ||| |||||||| ||| Sbjct 232464 TGATCTCCCATCATTGGTATGCCAACTAGCGGTACACCAGCTGTGATCGCTTCATCAGTA 232523 Query 122242 GACTGTACACCACCTTGAGTGACAAACGCTTTCACATTGGGATG 122285 || |||| ||| ||||| || | ||| ||| | ||| ||||| Sbjct 232524 GATTGTAAACCTCCTTGTGTTATAAATAATTTTATATTTGGATG 232567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434574885138240