Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq61578 165 2e-35 seq51658 104 5e-17 >seq61578 Length=3623949 Score = 165 bits (182), Expect = 2e-35 Identities = 169/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || | ||||||||| ||||| || |||||||| ||||| | || || Sbjct 3476195 CGAAGACGGAGCACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGAGAGTGTA 3476136 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||| |||| ||| ||||| ||||||||||| ||||| ||||| || || | ||| Sbjct 3476135 CGACCATCCTCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGGATACCT 3476076 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || ||||| ||||| || ||| ||||| || || ||||| || |||||| ||||| Sbjct 3476075 TCTTTGTCTTGGATTTTAGCTTTAACGTTCTCCATAGTGTCTGAAGGTTCAACTTCGAGG 3476016 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| || | |||||| || || | |||||| Sbjct 3476015 GTGATGGTCTTTCCTGTTAAAGTCTTGACGAAGATCTGCAT 3475975 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || |||||||||||||||||||| || | || || | ||||| Sbjct 3475958 AGTACCAAGTGGAGTGTCGACTCTTTTTGGATGTTATAGTCTGATAGTGTACGACCATCC 3475899 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| ||||| ||||||||||| ||||| ||||| || || | ||||| ||||| Sbjct 3475898 TCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGGATACCTTCTTTGTCT 3475839 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||| ||||| ||||| ||||| ||| |||||| ||||| || || ||| Sbjct 3475838 TGGATTTTAGCTTTAACGTTCTCGATAGTGTCTGAGGGTTCAACTTCGAGGGTAATAGTC 3475779 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| || || | |||||| Sbjct 3475778 TTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 3475747 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || || |||||||| || ||||| || || | | || | ||||||||||| ||| Sbjct 3474642 TGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGACAATGTGCGTCCATCTTCCAACTGT 3474583 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| |||||||| | | ||| ||||| || || | || |||||||| |||||||| Sbjct 3474582 TTGCCGGCGAAGATCAATCTTTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTG 3474523 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || ||||| || ||||| ||| |||||| || | ||||| ||||| || || Sbjct 3474522 GCCTTAACATTTTCAATTGTGTCCGAGGGTTCAACTTCTAATGTGATGGTCTTGCCAGTC 3474463 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | ||||| ||||| | |||||| Sbjct 3474462 AAGGTCTTGACAAAGATCTGCAT 3474440 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || || |||||||| || ||||| || || | | || | ||||||||||||||| Sbjct 3474414 TGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGACAATGTGCGTCCATCTTCCAGCTGT 3474355 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| |||||||| | | || ||||| || || | || |||||||| |||||||| Sbjct 3474354 TTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTG 3474295 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || ||||| || ||||| ||| |||||| || | ||||| || || || || Sbjct 3474294 GCCTTAACATTTTCAATTGTGTCCGAGGGTTCAACTTCTAATGTGATGGTTTTGCCAGTC 3474235 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | ||||| ||||| | |||||| Sbjct 3474234 AAGGTCTTGACAAAGATCTGCAT 3474212 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || || |||||||| || ||||| || || | | || | ||||||||||||||| Sbjct 3474186 TGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGACAATGTGCGTCCATCTTCCAGCTGT 3474127 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 | ||| |||||||| | | || ||| | || || | || |||||||| |||||||| Sbjct 3474126 TCGCCGGCGAAGATCAATCTCTGCTGGGCTGGGGGGATGCCCTCCTTGTCTTGGATCTTG 3474067 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || ||||| || ||||| || || ||||| | ||||| ||||| ||||| Sbjct 3474066 GCCTTAACATTTTCAATTGTGTCCGAAGGCTCCACCTCTAAGGTGATGGTCTTGCCCGTC 3474007 Query 211092 AGAGTCTTTACAAACACCTGCATTTT 211117 | ||||| || || | ||||||||| Sbjct 3474006 AAGGTCTTCACGAAAATCTGCATTTT 3473981 >seq51658 Length=184250 Score = 104 bits (114), Expect = 5e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 210993 TGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTG 211052 || ||||| ||||| | ||| ||||| || || ||||| ||| || |||||||||||| Sbjct 30419 TGCTGGTCCGGAGGGATTCCCTCCTTATCTTGAATCTTGGCTTTGACATTTTCGATGGTG 30360 Query 211053 TCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGC 211112 || ||| |||||||||||| ||||| || || |||||||| || || || || | |||| Sbjct 30359 TCCGAGGGTTCAACCTCGAGGGTGATGGTTTTCCCCGTGAGGGTTTTCACGAAAATCTGC 30300 Query 211113 ATTTT 211117 || || Sbjct 30299 ATCTT 30295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158213569739255