Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq48925 141 6e-29 seq61578 120 2e-22 seq51658 84.2 1e-11 >seq48925 Length=1097090 Score = 141 bits (156), Expect = 6e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| |||||||||||||| ||||| || || | || ||||| || | Sbjct 515176 AATGCAGATCTTCGTAAAAACCCTCACGGGTAAAACCATAACGTTAGAGGTTGAAGCCTC 515235 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | |||| ||||| |||||| |||||||| || | || |||||||| Sbjct 515236 TGACACTATCGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCACCAGATCA 515295 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | || || || ||||||||||| | ||||| | ||| || || ||| ||||| Sbjct 515296 GCAAAGATTGATCTTCGCCGGCAAACAGTTAGAAGATGGACGTACGTTGTCCGACTACAA 515355 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || || || ||| | || || || || ||| | |||||||| Sbjct 515356 CATCCAGAAGGAATCAACACTTCACTTGGTGTTGAGGCTTCGAGGAGG 515403 >seq61578 Length=3623949 Score = 120 bits (132), Expect = 2e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | || || ||||| ||||| | |||||||| || || Sbjct 3474212 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAAACCATCACATTAGAAGTTGAACCCTCG 3474271 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||||| | |||| | || | | ||||| || || | || ||||| || Sbjct 3474272 GACACAATTGAAAATGTTAAGGCCAAGA-TCCAAGACAAGGAGGGCATCCCCCCAGACCA 3474330 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || ||||||||||| |||||||| | |||||| || || ||||| Sbjct 3474331 GCAGAGATTGATCTTCGCCGGCAAACAGCTGGAAGATGGACGCACATTGTCTGACTACAA 3474390 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || |||||||| || | |||||||| Sbjct 3474391 CATTCAGAAAGAGTCAACCCTGCATTTAGT 3474420 Score = 114 bits (126), Expect = 9e-21 Identities = 160/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 23600 AATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAG 23659 |||||| ||||||||||||||||| || ||| | ||||| || || ||||| | || | Sbjct 3473975 AATTAC--AAAATGCAGATTTTCGTGAAGACCTTGACGGGCAAGACCATCACCTTAGAGG 3474032 Query 23660 TTGACTCCACGGACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTA 23718 | || | ||||||| ||| |||| |||| | || || ||||| || || | Sbjct 3474033 TGGAGCCTTCGGACACAATTGAAAATGTTAAGGC-CAAGATCCAAGACAAGGAGGGCATC 3474091 Query 23719 CCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTA 23778 || |||| || ||| | || || || |||||| |||| |||||||| | |||||| || Sbjct 3474092 CCCCCAGCCCAGCAGAGATTGATCTTCGCCGGCGAACAGCTGGAAGATGGACGCACATTG 3474151 Query 23779 GGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGT 23819 || |||||||| || |||||||| || | |||||||| Sbjct 3474152 TCTGACTACAACATTCAGAAAGAGTCAACCCTGCATTTAGT 3474192 Score = 114 bits (126), Expect = 9e-21 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || || || ||||||||||| || | Sbjct 3475747 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACTATTACCCTCGAAGTTGAACCCTCA 3475806 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || || ||||| | ||||| |||||||||||| | || ||||| || Sbjct 3475807 GACACTATCGAGAACGTTAAAGC-TAAAATCCAAGACAAAGAAGGTATCCCCCCAGACCA 3475865 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || || ||||||||||| |||| || | || || || || || || Sbjct 3475866 GCAACGTCTTATCTTCGCCGGCAAACAGTTGGAGGATGGTCGTACACTATCAGACTATAA 3475925 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| ||||||||||| ||| | || || || Sbjct 3475926 CATCCAAAAAGAGTCGACACTCCACTTGGT 3475955 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || ||||| || ||||| ||||||||||| | | Sbjct 3475975 ATGCAGATCTTCGTCAAGACTTTAACAGGAAAGACCATCACCCTCGAAGTTGAACCTTCA 3476034 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || || ||||| | ||||| |||||||||||| | || ||||| || Sbjct 3476035 GACACTATGGAGAACGTTAAAGC-TAAAATCCAAGACAAAGAAGGTATCCCCCCAGACCA 3476093 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || || ||||||||||| |||| || | || || | ||||||||| Sbjct 3476094 GCAACGTCTTATCTTCGCCGGCAAACAGTTGGAGGATGGTCGTACACTCTCCGATTACAA 3476153 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 3476154 CATCCAGAAGGAGTCTAC 3476171 Score = 105 bits (116), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | || || || || ||||| | |||||||| || || Sbjct 3474440 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACCATCACATTAGAAGTTGAACCCTCG 3474499 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||||| | |||| | || | | ||||| || || | || ||||| || Sbjct 3474500 GACACAATTGAAAATGTTAAGGCCAAGA-TCCAAGACAAGGAGGGCATCCCCCCAGACCA 3474558 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | || || || ||||||||||| ||||||| | |||||| || || ||||| Sbjct 3474559 GCAAAGATTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGCACATTGTCTGACTACAA 3474618 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || |||||||| || | |||||||| Sbjct 3474619 CATTCAGAAAGAGTCAACCCTGCATTTAGT 3474648 >seq51658 Length=184250 Score = 84.2 bits (92), Expect = 1e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||||||||| ||||| ||||| ||||| ||||| || Sbjct 29922 AAGATGCAGATTTTCGTGAAAACCCTCACGGGGAAAACCATCACCCTCGAGGTTGAACCC 29981 Query 23668 ACGGACACTGTTGAAA 23683 ||||||| | |||| Sbjct 29982 TCGGACACCATCGAAA 29997 Score = 84.2 bits (92), Expect = 1e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||||||||| ||||| ||||| ||||| ||||| || Sbjct 30295 AAGATGCAGATTTTCGTGAAAACCCTCACGGGGAAAACCATCACCCTCGAGGTTGAACCC 30354 Query 23668 ACGGACACTGTTGAAA 23683 ||||||| | |||| Sbjct 30355 TCGGACACCATCGAAA 30370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337749301658996