Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq61578 134 3e-26 seq63187 120 7e-22 seq37134 87.8 4e-12 >seq61578 Length=3623949 Score = 134 bits (148), Expect = 3e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| || || |||||||||| || || || | | || | ||||| Sbjct 3475958 AGTACCAAGTGGAGTGTCGACTCTTTTTGGATGTTATAGTCTGATAGTGTACGACCATCC 3475899 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||| || || ||||||||||| ||||| ||||| || || |||||||| |||||| Sbjct 3475898 TCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGGATACCTTCTTTGTCT 3475839 Query 225622 TGGATCTTTTGCTTCACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| |||| | | | ||||| |||||||||| ||| || || | || || || Sbjct 3475838 TGGAT-TTTAGCTTTAACGTTCTCGATAGTGTCTGAGGGTTCAACTTCGAGGGTAATAGT 3475780 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| ||||| || || | ||| | ||||| Sbjct 3475779 CTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 3475747 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || || ||||| || | ||||| || | ||| || | |||||||| ||||| Sbjct 3474186 TGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGACAATGTGCGTCCATCTTCCAGCTGT 3474127 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 | || |||||||| | || || ||| | || || || || ||||||||||||||||| Sbjct 3474126 TCGCCGGCGAAGATCAATCTCTGCTGGGCTGGGGGGATGCCCTCCTTGTCTTGGATCTTG 3474067 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| ||| ||| || ||||| || | ||||| ||||| ||||| |||||||||||| Sbjct 3474066 GCCTTAACATTTTCAATTGTGTCCGAAGGCTCCACCTCTAAGGTGATGGTCTTGCCCGTC 3474007 Query 225691 AAAGTTTTTATGAACACTTGCATTTT 225716 || || || | ||| | |||||||| Sbjct 3474006 AAGGTCTTCACGAAAATCTGCATTTT 3473981 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || || ||||| || | ||||| || | ||| || | |||||||| | ||| Sbjct 3474642 TGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGACAATGTGCGTCCATCTTCCAACTGT 3474583 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || |||||||| | || ||| ||||| || || || || ||||||||||||||||| Sbjct 3474582 TTGCCGGCGAAGATCAATCTTTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTG 3474523 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| ||| ||| || ||||| |||| ||| || ||||| ||||| |||||||| ||| Sbjct 3474522 GCCTTAACATTTTCAATTGTGTCCGAGGGTTCAACTTCTAATGTGATGGTCTTGCCAGTC 3474463 Query 225691 AAAGTTTT 225698 || || || Sbjct 3474462 AAGGTCTT 3474455 Score = 132 bits (146), Expect = 1e-25 Identities = 164/222 (74%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || | ||| ||||| || || || |||| |||||||||| | || Sbjct 3476195 CGAAGACGGAGCACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGAGAGTGTA 3476136 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || | ||| || || ||||||||||| ||||| ||||| || || |||||| Sbjct 3476135 CGACCATCCTCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGGATACCT 3476076 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || ||||||||||| ||| |||| | | | || || |||||||| | ||| || || | Sbjct 3476075 TCTTTGTCTTGGAT-TTTAGCTTTAACGTTCTCCATAGTGTCTGAAGGTTCAACTTCGAG 3476017 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || ||||| || | ||| | ||||| Sbjct 3476016 GGTGATGGTCTTTCCTGTTAAAGTCTTGACGAAGATCTGCAT 3475975 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || || ||||| || | ||||| || | ||| || | |||||||| ||||| Sbjct 3474414 TGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGACAATGTGCGTCCATCTTCCAGCTGT 3474355 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || |||||||| | || || ||||| || || || || ||||||||||||||||| Sbjct 3474354 TTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTG 3474295 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| ||| ||| || ||||| |||| ||| || ||||| ||||| || ||||| ||| Sbjct 3474294 GCCTTAACATTTTCAATTGTGTCCGAGGGTTCAACTTCTAATGTGATGGTTTTGCCAGTC 3474235 Query 225691 AAAGTTTT 225698 || || || Sbjct 3474234 AAGGTCTT 3474227 >seq63187 Length=15185 Score = 120 bits (132), Expect = 7e-22 Identities = 131/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || |||| |||| || || || ||| |||| ||||| ||| | ||||| Sbjct 1602 CAAATTTATAATACTATTGTTACAGCTCACGCTTTTATTATAATTTTTTTTATAGTTATA 1661 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || || ||||||||||| |||||||||| | || || ||||| Sbjct 1662 CCTATTATAATTGGAGGATTTGGAAATTGATTAATTCCTTTAATATTGGGAGCCCCTGAC 1721 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725 || ||||| || | | || |||||||| ||||||||| |||| ||||| ||| Sbjct 1722 ATAGCTTTCCCCCGAATAAATAATATAAGATTTTGATTATTACCTCCTTCATTA 1775 Score = 93.3 bits (102), Expect = 1e-13 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || || ||||||||||| ||||||||||| || | |||||||| ||||| || | Sbjct 2174 TTCTGGGTGCCCAAAAAATCAAAATAAATGTTGGTATAAAATAGGATCTCCTCCCCCAGC 2115 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||||||||||| |||||| ||||||| ||| ||||| Sbjct 2114 AGGATCAAAAAAAGAAGTATTTAAATTTCGATCTGTTAA 2076 >seq37134 Length=34866 Score = 87.8 bits (96), Expect = 4e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || |||| |||| || || || ||| |||| ||||| ||| | ||||| Sbjct 19217 CAAATTTATAATACTATTGTTACAGCTCACGCTTTTATTATAATTTTTTTTATAGTTATA 19158 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || || ||||||||||| |||||||||| | || || ||||| Sbjct 19157 CCTATTATAATTGGAGGATTTGGAAATTGATTAATTCCTTTAATATTGGGAGCCCCTGAC 19098 Query 7672 ATGGCTTTTCC 7682 || ||||| || Sbjct 19097 ATAGCTTTCCC 19087 Score = 87.8 bits (96), Expect = 4e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || |||| |||| || || || ||| |||| ||||| ||| | ||||| Sbjct 19371 CAAATTTATAATACTATTGTTACAGCTCACGCTTTTATTATAATTTTTTTTATAGTTATA 19312 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || || ||||||||||| |||||||||| | || || ||||| Sbjct 19311 CCTATTATAATTGGAGGATTTGGAAATTGATTAATTCCTTTAATATTAGGAGCCCCTGAC 19252 Query 7672 ATGGCTTTTCC 7682 || ||||| || Sbjct 19251 ATAGCTTTCCC 19241 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || || ||||||||||| ||||||||||| || | ||||| || || || || | Sbjct 34143 TTCTGGGTGTCCAAAAAATCAAAATAAATGTTGGTATAAAATAGGGTCTCCCCCTCCAGC 34202 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||||||||||| |||||| ||||||| ||| ||||| Sbjct 34203 AGGATCAAAAAAAGAAGTATTTAAATTTCGATCTGTTAA 34241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191565746491778