Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq48925 609 3e-169 seq48068 127 3e-24 seq63168 105 9e-18 >seq48925 Length=1097090 Score = 609 bits (674), Expect = 3e-169 Identities = 1211/1782 (68%), Gaps = 30/1782 (2%) Strand=Plus/Plus Query 76773 TTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCA 76832 || || | ||| |||||||||| | || || || ||| | |||| ||| ||||| || Sbjct 839825 TTGTCAACTGTGAACTGAATTGCATTAGCGGCAGGCTTTATGCGTAAATAATACATTCCT 839884 Query 76833 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGA 76892 ||||| ||||||| ||||| |||| || || || |||| ||| |||| |||| Sbjct 839885 GTTTTCAGACCCATTTTCCATGCGTAAAAGTGAATCGACGTCAATTTTCCATAATTAGGT 839944 Query 76893 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 76952 || || | |||||| || | ||| |||||||| || || || |||||||| ||||| ||| Sbjct 839945 TCAGCCACATGAATGTTAAACGATTGACTTTGGTCTATAAATGCTCCTCTGTCAGCGGCC 840004 Query 76953 ATTTTTATAATGGTCTTTTGA--GGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATAT 77010 ||||| || || | |||| | | ||| ||||||| ||||| | | | | | |||| Sbjct 840005 ATTTTAAT--TGTTGTTTTAACTGAAATCTCCCAAACTGTTTTATACAACTCTCTAATAT 840062 Query 77011 CATCTGGAA---GGTTTGTATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTA 77067 | | ||| | | | ||||||||||||||||| | ||| || |||||| | Sbjct 840063 CTTTTGGTATACGCTCAATATTTTGAATGGAACCATTGTTGTGTATTATCAGATTCTTCA 840122 Query 77068 TATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTT 77127 | || || | ||| || | || |||||| |||| | | |||| | ||||| | | Sbjct 840123 TGTCTTCGTCCCATAAATCTGCCTGTGTTAAGTCTCTCAATAAATGATGGTTAACAACCT 840182 Query 77128 GAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATT 77187 | |||||||||||||| || | | |||||| || || | ||||| | || | Sbjct 840183 GGAATTCTCCAGACAAAACACGTCTTTGGTAAATGTTTGATGTGAACGGTTCAAAGGACT 840242 Query 77188 CATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATA-AACT- 77245 |||| ||||| || ||||| || ||||| || || ||||| || | | |||| || | Sbjct 840243 CATTATTTCCTAAGATTTGTGCTGTAGACGCTGTGGGCATTGGAG---CTAATAGAAGTG 840299 Query 77246 -ATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTG 77304 ||| | ||| |||||| | ||||||||||| ||| ||| | ||| ||||| | Sbjct 840300 AATTGCGGAGTCCATGTTTGGCAATTTTATCTTTCAGAATAGACCAGTTCCAGAGATCAG 840359 Query 77305 AAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTAT 77364 || |||||| | || ||||| | || || | || ||| ||| | || Sbjct 840360 TTGGAGTTTTATCCCACATGTCATATTGCAAGATGCCTTGGCTTGCAGGACTTCCTTCAT 840419 Query 77365 ATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAAT 77424 |||| |||| ||| ||| ||| || ||||||||||| ||||| ||||||||||||| Sbjct 840420 ATGTACTATAAACTCCCTCTTTTTGCGCCAGTTCACAACTGGCTTCTAATGCTCCGTAAT 840479 Query 77425 AAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAAT 77484 | || |||||||| || | | || || | |||||| ||| ||| | ||| Sbjct 840480 ATATGGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCTTCTTCACTTTCATATGGAATGC 840539 Query 77485 GTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCT 77544 | | || | ||| | ||| ||||| || || ||||||||||| |||||||| || | | Sbjct 840540 GCATTAGTACAAATGTATCAGCTAACCCTTGCACTCCAATACCTATAGGTCTGTGACGCA 840599 Query 77545 TATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGAT 77604 | || ||| |||| ||||| || | || ||| |||||| || ||||||||||| || | Sbjct 840600 TGTTAGAATTTTTTGCTTCAGGCACTGGGTAAAAATTAACATCAATAATTTTATTAAGGT 840659 Query 77605 TTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATCT---A 77661 | | || || || || || | || | ||| | || || |||| Sbjct 840660 TCTGTGTGATTATCTTTGTGACTTCTTTCAACTTTATAAAGTTGTATGTTTTATCTTCAT 840719 Query 77662 TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGG 77721 |||||||| | |||||||| || || |||| ||||||||| || || |||| || | Sbjct 840720 TAACAAACCTATTCAAAGCAATTGAAGCTAAATTACAAACAGCAACTTCATCTGCTGAAG 840779 Query 77722 CATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGT 77781 |||| | || ||||| || | |||||| ||||| || ||||| ||||||| ||| | Sbjct 840780 TGTATTCCACAATTTCGGTGCACAAATTACTGCATTTTATGGTGCCAAGATTTTTTTGAT 840839 Query 77782 TGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTG 77841 | || ||| |||| ||||| || ||||| || || | || || || ||||| | |||| Sbjct 840840 TACTTTTTCTATTACATGAATCTTTATACAGCATGTATGGTGTGCCCGTTTCCACTTGTG 840899 Query 77842 ATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATT--TGTATCGCCTCTC 77899 ||| || || | |||||| | || |||| | | | || ||| | || Sbjct 840900 CTTCTATTATTGCTTTCCACAGTTCTTGAGCTCGGA--CTTGCTTAACAAATCTTTTTTC 840957 Query 77900 TCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGG 77959 |||||||| ||| | ||||||||| ||||||||| |||| | | || || Sbjct 840958 CTGTTCATATTTTTCATACAATGCTTCAAATTCTTCTCCCCAACAATCAGCAAGACCGGG 841017 Query 77960 GCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAG 78019 ||| |||| || ||||| | ||| |||||| | || ||||||||||| | Sbjct 841018 GCAATCATGAGGACACATTAGACTCCACATTTCATCTTTTTCTACACGTTTCATAAATAA 841077 Query 78020 ATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATT 78079 ||| || ||||||| || ||||| |||| | || ||||| || || ||||| Sbjct 841078 ATCTGGGATCCATAAGGCGTAAAATAATTCTCTAGCTCGGACCTCTTCTTTGCCAGTATT 841137 Query 78080 CTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCAT 78139 |||||| ||||| | |||||| | || |||||| ||||| ||||| || || || || | Sbjct 841138 CTTTTTCAGATCTAAAAACTCAAAAACATCAGAGTGCCAAGGTTCAAGGTAAATAGCAAA 841197 Query 78140 AACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCT 78199 |||| ||||||||||| ||||| || || | ||| ||||| || ||||| || ||||| Sbjct 841198 TGCTCCCGGTCGTTTATTGCCTCCTTGGTCGACATACCTGGCTGTATTATTGTACACTCT 841257 Query 78200 CAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGC 78259 ||||||||| | | || || || |||||| || |||| || || | || |||| Sbjct 841258 CAACATTGGCACGAGGCCATTGGAAACTCCATTAGTACCAGCTATGTAGGTACCTTTTGC 841317 Query 78260 GCGAATATTACTAATGGATAT----CCCTATTCCTCCTGCCATCTTAGATATTAGAGCGC 78315 | || |||| | || ||||| || || || || || |||| || | Sbjct 841318 CCTGAT----GCAATGAACATGAAGGCCTATACCACCAGCAGATTTTGAGATTAAGGCAC 841373 Query 78316 AACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAAC 78375 | |||| | ||| || || |||||||| || || ||||| |||| | ||| || | Sbjct 841374 ATTGTTTTAGTGTGTCATATATACCCTCAATGCTATCATCTTTCATAGCTATAAGGAAGC 841433 Query 78376 AGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAA 78435 | ||| | ||| | |||| |||| |||||||| ||| ||||| |||| Sbjct 841434 AAGAAGATAATTGTGGTCTTGGAGTTGCTGCTGAGAATAATGTGGGACTGGCATGAGTAA 841493 Query 78436 ACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGA 78494 | |||||||||| | | |||||| |||||||| ||||| || ||||| || | || Sbjct 841494 AATATTTTTCAGATAACAAATTGTAAGTTTCAATGGCTGAATCAATGTCTTCACCG-TGG 841552 Query 78495 ATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCA 78536 ||||| | || || ||||||| ||||||||||||||||||| Sbjct 841553 ATTCCAATCGAGACTCGCATCAGCATATGCTGAGGTCTTTCA 841594 Score = 100 bits (110), Expect = 4e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 78753 TTTTTTGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCA 78812 || |||||||| ||||||| |||||| | |||| |||||||||||| | |||||||| Sbjct 842774 TTCTTTGTTTCTTTGTGTAAATTAGAGATTGCTAATCTTGCAGCTAGCACTGCATAATCC 842833 Query 78813 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGTT 78872 ||||| | |||||| ||||| || ||||||| |||||| | || || || | |||| Sbjct 842834 GGATGATCTGTAGTCATGGTGGCAGCAGTTTCTGCAGCTAAATTGTCCAATTCCACAGTT 842893 Query 78873 GTGACCCC 78880 || || || Sbjct 842894 GTTACTCC 842901 >seq48068 Length=254185 Score = 127 bits (140), Expect = 3e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48391 TTTCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATAT 48450 |||| ||| ||| ||| || ||||| || || | ||||| || ||||| | || Sbjct 224886 TTTCTTTGGGATCCCTAATATATGTATCAATCAACAAGGAGTACATCTCAGAGTGTACAT 224827 Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTAC 48510 |||| || || || |||||||| ||||| | || ||||| ||| || || || Sbjct 224826 TTTCCATAGCGATTTGAAATCCATAAAAGAACCTTGCTTCACCGATTTGAACTTCTTGTG 224767 Query 48511 AAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATA 48570 ||||||| || | ||||||||||||||||| |||||| ||||||||||||||| || | Sbjct 224766 AAAATCGCTCTACTAAATTCTCATTTACTATACCATCAGAAGCAGCAAAAAATGCCAACA 224707 Query 48571 CATGTTTAATAAA 48583 ||||||||||||| Sbjct 224706 CATGTTTAATAAA 224694 >seq63168 Length=2713828 Score = 105 bits (116), Expect = 9e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 170984 CCTATGTTAGCAGAATCATGTGATTCTGTTAACAAGGCATTTAAAAAATTTCCATCTGGA 171043 ||||||||||| ||| | ||| | || || | | ||| | || |||| |||| |||| Sbjct 1029513 CCTATGTTAGCTGAAGCGTGTAAGTCGGTAGAAATGGCTATGAAGAAATGTCCAAATGGA 1029454 Query 171044 ATGTTTGCAGAAGTAAAATATGATGGTGAACGAGTCCAAGTTCATAAAAACAATAATAAT 171103 |||||| ||||| | ||||||||||| || |||| ||||||||||| | | | Sbjct 1029453 ATGTTTTCAGAAATCAAATATGATGGAGAGAGAGTGCAAGTTCATAAGAGAGGTTCGGAA 1029394 Query 171104 TTTGCCTTCTTTAGCAGAAACATGAAACCAGTTTTACCACATAAAGTTGATTATCTCAAG 171163 ||| | |||| || | ||||| ||| | |||||||||| || || ||||| Sbjct 1029393 TTTAAATACTTTTCTCGAGCTTTAAAACCTGTTATGGCACATAAAGTCAATCATTTCAAG 1029334 Query 171164 GAATACCTTCCTAAAGCATTT 171184 ||||| |||||||| |||||| Sbjct 1029333 GAATATCTTCCTAAGGCATTT 1029313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694120124531680