Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq9460 141 8e-29 seq26895 116 3e-21 seq61578 96.9 3e-15 >seq9460 Length=1391182 Score = 141 bits (156), Expect = 8e-29 Identities = 191/266 (72%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 104975 ATGCCCGGCCCTATACACCCTAAATACGGCTCCGAGTCTGCACGTTTAAAAACTTTTGAG 105034 ||||||||||| | ||||| ||||| ||||||| | || ||| | || || | Sbjct 538867 ATGCCCGGCCCCGTGCACCCCCGATACGCCTCCGAGGCGGCGCGTCTCCGCACCTTCAAA 538926 Query 105035 GATTGGCCACTTAGTTTAAAACAAAGGCCAGAGCAATTGGCCGAAGCCGGTTTTTACTAC 105094 || ||||| | | | ||| | |||||| | |||| || ||||| || | |||| Sbjct 538927 GACTGGCCGCGGTGCATGCGACAGAAACCAGAGGAGCTGGCGGAGGCCGGCTTCTTCTAC 538986 Query 105095 ACCGGCAAAGGTGATAAAGTCAAATGTTTTTATTGCGACGGCGGCCTTAAGGATTGGGCA 105154 |||||| | || || ||| ||||| || || |||||||||||||| ||||| |||| Sbjct 538987 ACCGGCCACGGCGACAAAACGAAATGCTTCTACTGCGACGGCGGCCTCAAGGACTGGGAG 539046 Query 105155 AACGCCGACGAACCGTGGGAGGAACATGCACGTTGGTTTGATCGCTGTTCGTTCGTAAAA 105214 |||| ||||| ||||||||| | || || || ||||| || ||||| | | ||| | Sbjct 539047 AACGACGACGTCCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGCTGCGCTTACGTTCAG 539106 Query 105215 CTGGTCAAAGGACACGACTACGTGCA 105240 ||||| ||||| | ||||||||| || Sbjct 539107 CTGGTGAAAGGCCGCGACTACGTACA 539132 Score = 109 bits (120), Expect = 5e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 104734 CAACGGGTTCTACTATTTGGGGCGCGCGGACGAAGTGCGCTGCGCGTTCTGCAAAGTGGA 104793 |||||| |||||||| | || |||| ||||| || |||||||| || || ||||| || Sbjct 538632 CAACGGCTTCTACTACCTCGGCCGCGGCGACGAGGTCCGCTGCGCCTTTTGTAAAGTCGA 538691 Query 104794 AATAATGCGCTGGTTGGAGGGCGACGACCCGGCCGTAGATCATAAACGATGGGCGCCACA 104853 ||| ||||||||| |||||||||||||||| || || || | || ||||| || || Sbjct 538692 AATCATGCGCTGGGTGGAGGGCGACGACCCCGCTAAGGACCACCAGCGGTGGGCCCCGCA 538751 Query 104854 GTGCCCGTTTTTG 104866 |||||| ||| || Sbjct 538752 GTGCCCCTTTCTG 538764 >seq26895 Length=1000185 Score = 116 bits (128), Expect = 3e-21 Identities = 105/132 (80%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 107558 GTTGCCCAAATCGCCGACGTGACGCTCCGCGGCGTCGGGCGCGCCATGCTGCTGATGCGT 107617 |||||| | ||||||||||||||| | ||||||| ||| |||||||||| ||| | | Sbjct 288911 GTTGCCGAGGTCGCCGACGTGACGCACAGCGGCGTTGGGGGCGCCATGCTCCTGCTTGTT 288852 Query 107618 AGGATTAAAGTGTTCGCCTGCCGACGTGCACCCATTGCTTGTGTCGCCAAATTCGTGCAC 107677 || |||||||| | ||||| || ||||| ||||| | |||| ||||| |||||||| Sbjct 288851 GGGGTTAAAGTGGGCACCTGCAGATGTGCAACCATTTGTGTTGTCACCAAACTCGTGCAC 288792 Query 107678 GTGAAAACCGTG 107689 ||||||||||| Sbjct 288791 ATGAAAACCGTG 288780 >seq61578 Length=3623949 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || || ||||| || ||||| ||||| || |||||| | ||| |||||| Sbjct 3475747 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACTATTACCCTCGAAGTTGAACCCTCA 3475806 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || || | | | || ||| ||||| ||||||||||| | ||| || || Sbjct 3475807 GACACTATCGAGAACGTTAAAGCTAAAATCCAAGACAAAGAAGGTATCCCCCCAGACCAG 3475866 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111277 ||| | ||||| | || |||||||| ||||| ||| || | ||||| | || |||| Sbjct 3475867 CAACGTCTTATCTTCGCCGGCAAACAGTTGGAGGATGGTCGTACACTAT--CAGACTATA 3475924 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 | || |||||||| || ||||| || || || | ||||| || ||||| Sbjct 3475925 ACATCCAAAAAGAGTCGACACTCCACTTGGTACTCCGTCTCCGTGGTGG 3475973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421486366753912