Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq18715 255 4e-63 seq61578 116 3e-21 seq48925 109 4e-19 >seq18715 Length=1377716 Score = 255 bits (282), Expect = 4e-63 Identities = 654/986 (66%), Gaps = 35/986 (4%) Strand=Plus/Minus Query 5947 ATGTCTTTGTAGTCCACGACACCGTTTTCCCAGGAACCCTTTACGGGACCCGTGGCAGTG 6006 || ||| | || || || ||||||| || ||| | ||| || || || || || || || Sbjct 1370966 ATTTCTCTATAATCAACTACACCGTCTTGCCAAGTACCTTTGACAGGTCCAGTCGCGTTG 1370907 Query 6007 CCTGTGAAGGGATTGTTGTTGGTGATGTTGTGGATTCCACGCCATCCCCTGCCGTACATG 6066 || ||||| |||||||| || | |||||| | || ||| || | |||||||| Sbjct 1370906 CCAGTGAATGGATTGTTATTTTCGTAGTTGTGAACCCCGGTCCAGCCTCGTCCGTACATA 1370847 Query 6067 GCCACGCCCACCACCAATTTGTTTGGGTTCACGCTCTGATTGAGCAGGCGTTGGACGGCG 6126 || || |||||||| | || || ||||| |||| ||| |||| || || | Sbjct 1370846 GCTACACCCACCACAATCTTCTTAGGGTTGACGCCTTGAGCAAGCAAATATTTCACACCA 1370787 Query 6127 AACGCGGTGGTGTACTTTTCGGTGGGGTTCCATGTGGGCGCGTACAGGGGCGTCTGCAGT 6186 || | ||||| || |||| |||||||||| | || ||||| || || ||||| | Sbjct 1370786 AAGTCAGTGGTATAAGTTTCCTTGGGGTTCCAAGCAGGAGCGTAAAGCGGTGTCTGATGA 1370727 Query 6187 CCCAGATCGGTGT---TAGACCAGGCTCCCTTGAAATCGTACGTCATGACGAAAATATGA 6243 || || ||||| |||||||||| || || ||||| || |||||| |||||| ||| Sbjct 1370726 CCGAG---GGTGTCATTAGACCAGGCGCCTTTAAAATCATAACTCATGAGGAAAATGTGA 1370670 Query 6244 TCCAGATACTCCTGCACCGCACCGTATTCTACAACGTTTATTTTGTCGTAGCCCCCGCTG 6303 |||| || | ||| || | | ||| || || || | || || || | || | || Sbjct 1370669 TCCATGTATTTCTGAGCCTCGCTGTAATCGACCACTTGAATCTTATCCCATCCAGCACTA 1370610 Query 6304 ATGGCGCTTGTGAGCAGATACTTGCGACCCGTGCGAGTCTCCAGAC----CGTCCAGCAT 6359 || ||| || ||| || || ||| || ||| |||| ||| || ||| Sbjct 1370609 ATAGCGGAAGTCAGCTCGTATTTCTTACCGGTC----TCTTCAGAAAGGTCGTTCAACAT 1370554 Query 6360 GGACCTGAGGTCGCCCAAGAGCGCTTGATAGGTGA----CGCCGTCGACTGTGACGTTTC 6415 | | || || | || | | || | | ||||| || | | ||| Sbjct 1370553 TTCACGCAATTCCTTCATTAA---TTCA-ACGTAAACATCTCCGTC--CTTAGG-GCTTC 1370501 Query 6416 CTAAGGCAGGATTGGCTCCCTTGCCTCCGGGAAATTCCCAATCTATGTCCACGCCGTCGA 6475 ||| | |||| || |||||||| || || || ||||||||||| || || || ||||||| Sbjct 1370500 CTAGGTCAGGGTTAGCTCCCTTACCGCCAGGGAATTCCCAATCGATATCAACACCGTCGA 1370441 Query 6476 AGAACTTCCAAGTTTCCAGAAATTCTTCGACGCTCTCTACGAAC--ACCTTTCTTTTAAT 6533 |||||||||| ||| ||||| |||| || || ||||| |||| |||| | | Sbjct 1370440 AGAACTTCCAGGTTAGAAGAAAATCTTTCACAGAATCAACGAAGCGACCTCTCTTCTCTT 1370381 Query 6534 CGTGTCGTTGAGCTGGTAAAAGGGATCGCTCAGCGTCCACCCACCGATCGAGGGCAGGAT 6593 ||||| ||| | | ||||||||| || ||||| || ||||| || || || || Sbjct 1370380 --TGTCGGTGAAGAAGAAGAAGGGATCGGCAAGAGTCCAGCCTCCGATGGAAGGTAGAAT 1370323 Query 6594 GGTCAGATGCGGATTGTGTTTTCGTATGGCCATAAGCTGACCGAAATTACCCTTGTACAT 6653 | || | || || || | | | ||| |||||||| || || || ||||| Sbjct 1370322 TTTAAGTTCAGGCCTGGCTTGTTTGAGAGACATCAGCTGACCAAAGTTGCCTTTGTATGG 1370263 Query 6654 TTC---CGAGTAGGCCTCGACGCCCTTCTGGGGTTTTTGTAGTGCGCCCCATATATCGTG 6710 ||| | || | | | | |||||||| || || || || ||| |||| ||||| Sbjct 1370262 TTCATTCCAGGAAGAC---AGTCCCTTCTGTGGCTTCTGAAGAGCGGCCCACGGGTCGTG 1370206 Query 6711 TATGGACACCTTGAAGTCGTCTCGTCCCTCGCACGATCGCTGCAGAGCTTCGAACGAGCC 6770 || || || ||||| || || || || ||| ||||| || ||||||| ||| ||| Sbjct 1370205 AATAGAAACTTTGAAATCTTCGCGGCCGCTGCATGATCGTTGAAGAGCTTGGAAACTGCC 1370146 Query 6771 CGGCACCTGTTTCAGAGCGTCGTTGATACCATCCCCTCCGCACATGGGCACGAATCCGTA 6830 | || || | | ||||||||| || || |||||||| || || | ||| ||||| Sbjct 1370145 TTCGATCTCCTTTAAACTGTCGTTGATGCCGTCGCCTCCGCAAATAGGAATGAAACCGTA 1370086 Query 6831 CAGCAGATGTGTGAGATTGGGAATGGGGATTCTGTCGGCGGGAAACTGTCTGTCGTAAAC 6890 || ||||| || ||||| ||||| || | | ||| | || || | ||| |||||| Sbjct 1370085 CAAAAGATGCGTCAGATTAGGAATCGGTACACGATCGACTGGGAATTTTCTTGGGTAAAC 1370026 Query 6891 ACCCCACTCCACGAAGTAAGCTCCGA 6916 |||||| || || ||||| ||||||| Sbjct 1370025 ACCCCATTCAACAAAGTACGCTCCGA 1370000 >seq61578 Length=3623949 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| |||||| || |||||| |||||||||||||||| |||| || | || || Sbjct 3476184 CACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGAGAGTGTACGACCATCCTC 3476125 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||| || ||||| ||||| | ||| ||||| |||| || | |||||| || || Sbjct 3476124 CAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGGATACCTTCTTTGTCTTG 3476065 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 || || |||| || |||| | || ||||| | | ||| || || | || || |||| Sbjct 3476064 GAT-TTTAGCTTTAACGTTCTCCATAGTGTCTGAAGGTTCAACTTCGAGGGTGATGGTCT 3476006 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || | ||||| |||||||| ||||| Sbjct 3476005 TTCCTGTTAAAGTCTTGACGAAGATCTGCAT 3475975 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || || ||| ||||||||||| || || | ||| || | || ||| Sbjct 3475955 ACCAAGTGGAGTGTCGACTCTTTTTGGATGTTATAGTCTGATAGTGTACGACCATCCTCC 3475896 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | ||| || ||||| ||||| | ||| ||||| |||| || | |||||| || || Sbjct 3475895 AACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGGATACCTTCTTTGTCTTGG 3475836 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || || |||| || |||| | || ||||| | || ||| || || | ||||| ||||| Sbjct 3475835 AT-TTTAGCTTTAACGTTCTCGATAGTGTCTGAGGGTTCAACTTCGAGGGTAATAGTCTT 3475777 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | |||||| |||||||| ||||| Sbjct 3475776 GCCAGTCAAGGTCTTGACGAAGATCTGCAT 3475747 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||| || || |||||||| || | | | ||| | || |||||||| | ||||| || Sbjct 3474175 CTCTTTCTGAATGTTGTAGTCAGACAATGTGCGTCCATCTTCCAGCTGTTCGCCGGCGAA 3474116 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||||| | |||||| ||| || | || ||||| || ||||| ||| | | Sbjct 3474115 GATCAATCTCTGCTGGGCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTAACATT 3474056 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || ||||| | | |||||||| | || || ||||| ||||| | ||||||||| Sbjct 3474055 TTCAATTGTGTCCGAAGGCTCCACCTCTAAGGTGATGGTCTTGCCCGTCAAGGTCTTCAC 3473996 Query 44326 GAAGATTTGCATGATGTGAATGAAA 44350 ||| || ||||| ||| | || || Sbjct 3473995 GAAAATCTGCATTTTGTAATTGTAA 3473971 >seq48925 Length=1097090 Score = 109 bits (120), Expect = 4e-19 Identities = 164/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 44107 CATTCCC-CCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAAT 44165 |||| || |||| || |||||||||| |||||| || ||||| ||||||||||| | Sbjct 515408 CATTACCTCCTCGAAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGT 515349 Query 44166 CGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 ||| | || | || || | ||| || ||||| |||||||| | |||||||||| Sbjct 515348 CGGACAACGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTG 515289 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATT 44285 || | || || || || || ||| || | || | || ||||| | || || Sbjct 515288 GTGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTT 515229 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| | ||| || || || ||||||||||| || |||||||| ||||| Sbjct 515228 CAACCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCAT 515177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359713174430379