Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq61578 163 7e-35 seq48925 149 2e-30 seq51658 134 3e-26 >seq61578 Length=3623949 Score = 163 bits (180), Expect = 7e-35 Identities = 160/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || || || |||||||| || ||| ||||||| Sbjct 3475750 CAGATCTTCGTCAAGACCTTGACTGGCAAGACTATTACCCTCGAAGTTGAACCCTCAGAC 3475809 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| ||| || || || ||||||||||| ||||| || ||||||||| Sbjct 3475810 ACTATCGAGAACGTTAAAGCTAAAATCCAAGACAAAGAAGGTATCCCCCCAGACCAGCAA 3475869 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||||||||| |||||| | || ||||| | || || | || |||||| || Sbjct 3475870 CGTCTTATCTTCGCCGGCAAACAGTTGGAGGATGGTCGTACACTATCAGACTATAACATC 3475929 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 |||||||| || ||||| || |||| Sbjct 3475930 CAAAAAGAGTCGACACTCCA-CTTG 3475953 Score = 163 bits (180), Expect = 7e-35 Identities = 160/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | |||||||| || ||||||||||| || ||| |||||| Sbjct 3475978 CAGATCTTCGTCAAGACTTTAACAGGAAAGACCATCACCCTCGAAGTTGAACCTTCAGAC 3476037 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| || || || ||||||||||| ||||| || ||||||||| Sbjct 3476038 ACTATGGAGAACGTTAAAGCTAAAATCCAAGACAAAGAAGGTATCCCCCCAGACCAGCAA 3476097 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||||||||| |||||| | || ||||| | || || ||||||| ||| || Sbjct 3476098 CGTCTTATCTTCGCCGGCAAACAGTTGGAGGATGGTCGTACACTCTCCGATTACAACATC 3476157 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 3476158 CAGAAGGAGTCTACTCTTCA-CTTG 3476181 Score = 120 bits (132), Expect = 7e-22 Identities = 153/210 (73%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | ||||||||||| || | || || || || |||||| | |||||||| Sbjct 3473981 AAAATGC---AGATTTTCGTGAAGACCTTGACGGGCAAGACCATCACCTTAGAGGTGGAG 3474037 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || ||||| || || || || || ||||| || ||||| || || ||||| || Sbjct 3474038 CCTTCGGACACAATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCA 3474097 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 | |||||| || | ||||||||||| ||||||| ||||||||| | || | | || Sbjct 3474098 GCCCAGCAGAGATTGATCTTCGCCGGCGAACAGCTGGAAGATGGACGCACATTGTCTGAC 3474157 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCAT 178124 || ||| | || ||||| ||||| |||||| Sbjct 3474158 TACAACATTCAGAAAGAGTCAACCCTGCAT 3474187 Score = 114 bits (126), Expect = 3e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || || ||||| ||||| | || || ||| ||| ||| Sbjct 3474215 CAGATCTTTGTCAAGACCTTGACTGGCAAAACCATCACATTAGAAGTTGAACCCTCGGAC 3474274 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| || ||||| || || ||||| || |||||||| Sbjct 3474275 ACAATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAG 3474334 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| |||||||| ||||||||| | || | | || || ||| | Sbjct 3474335 AGATTGATCTTCGCCGGCAAACAGCTGGAAGATGGACGCACATTGTCTGACTACAACATT 3474394 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || ||||| ||||| |||||| Sbjct 3474395 CAGAAAGAGTCAACCCTGCAT 3474415 Score = 111 bits (122), Expect = 4e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || || || || ||||| | || || ||| ||| ||| Sbjct 3474443 CAGATCTTTGTCAAGACCTTGACTGGCAAGACCATCACATTAGAAGTTGAACCCTCGGAC 3474502 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| || ||||| || || ||||| || ||||||||| Sbjct 3474503 ACAATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAA 3474562 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| |||||| | ||||||||| | || | | || || ||| | Sbjct 3474563 AGATTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGCACATTGTCTGACTACAACATT 3474622 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || ||||| ||||| |||||| Sbjct 3474623 CAGAAAGAGTCAACCCTGCAT 3474643 >seq48925 Length=1097090 Score = 149 bits (164), Expect = 2e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| ||||| || ||||| || || | ||||| ||| ||| ||| Sbjct 515180 CAGATCTTCGTAAAAACCCTCACGGGTAAAACCATAACGTTAGAGGTTGAAGCCTCTGAC 515239 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| || ||||| |||||||| || || || || || |||||| Sbjct 515240 ACTATCGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCACCAGATCAGCAA 515299 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| |||||| | ||||||||| | || | |||| || ||| || Sbjct 515300 AGATTGATCTTCGCCGGCAAACAGTTAGAAGATGGACGTACGTTGTCCGACTACAACATC 515359 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || ||||||||||| || | || ||||| || Sbjct 515360 CAGAAGGAATCAACACTTCACTTGGTGTTGAGGCT 515394 >seq51658 Length=184250 Score = 134 bits (148), Expect = 3e-26 Identities = 101/119 (85%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| ||||| || ||||| |||||||||||||| ||| ||| ||| Sbjct 30301 CAGATTTTCGTGAAAACCCTCACGGGGAAAACCATCACCCTCGAGGTTGAACCCTCGGAC 30360 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 |||||||| || |||||| |||||||| || || || |||||||||||||||||||| Sbjct 30361 ACCATCGAAAATGTCAAAGCCAAGATTCAAGATAAGGAGGGAATCCCTCCGGACCAGCA 30419 Score = 95.1 bits (104), Expect = 3e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| ||||| || ||||| |||||||||||||| ||| ||| ||| Sbjct 29928 CAGATTTTCGTGAAAACCCTCACGGGGAAAACCATCACCCTCGAGGTTGAACCCTCGGAC 29987 Query 177984 ACCATCGAGAACGTCAAACAAAAGATT 178010 |||||||| || |||||| |||||| Sbjct 29988 ACCATCGAAAATGTCAAAGCCAAGATT 30014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202756679157278