Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20machaon_20[refseq_20GCF_5F001298355.1_202015-09-28] 63,187 sequences; 278,436,446 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq61578 107 2e-18 seq48925 102 8e-17 >seq61578 Length=3623949 Score = 107 bits (118), Expect = 2e-18 Identities = 169/238 (71%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 41626 TACATCACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTT 41685 |||| ||| ||||||||| ||||| | ||||| || || || ||||||||| ||||| Sbjct 3476210 TACAGCAC-GCCGCCGCGAAGACGGAGCACCAAGTGAAGAGTAGACTCCTTCTGGATGTT 3476152 Query 41686 ATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTG 41745 || |||||||| || || | || || | ||| ||||||||||| || || || || || Sbjct 3476151 GTAATCGGAGAGTGTACGACCATCCTCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTG 3476092 Query 41746 GTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGC 41804 ||| | ||| | | || |||| | || |||| |||| |||| | || |||||| Sbjct 3476091 GTCTGGGGGGATACCTTCTTTGT-CTTGGATTTTAGCTTTAACGTTCTCCATAGTGTCTG 3476033 Query 41805 TCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || || | || || || || || || | ||||| ||||| |||||||| Sbjct 3476032 AAGGTTCAACTTCGAGGGTGATGGTCTTTCCTGTTAAAGTCTTGACGAAGATCTGCAT 3475975 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || | |||||| || ||| ||||||||||| ||||| || Sbjct 3474210 CCACCTCGGAGGCGGAGTACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGAC 3474151 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || ||||| | ||||||||| |||| | ||| ||| | | ||| Sbjct 3474150 AATGTGCGTCCATCTTCCAGCTGTTCGCCGGCGAAGATCAATCTCTGCTGGGCTGGGGGG 3474091 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||| | || | || || | ||| | | ||||| | |||||| Sbjct 3474090 ATGCCCTCCTTGT-CTTGGATCTTGGCCTTAACATTTTCAATTGTGTCCGAAGGCTCCAC 3474032 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || || ||||||| ||||| |||||||||||||| || Sbjct 3474031 CTCTAAGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAAATCTGCATTTT 3473981 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || | |||||| || ||| ||||||||||| ||||| || Sbjct 3474438 CCACCTCGGAGGCGGAGTACTAAATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCAGAC 3474379 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || ||||| ||||||||||| |||| | ||| ||||| | ||| Sbjct 3474378 AATGTGCGTCCATCTTCCAGCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGG 3474319 Query 41756 ACGCTCTCCTTGTC 41769 | || ||||||||| Sbjct 3474318 ATGCCCTCCTTGTC 3474305 >seq48925 Length=1097090 Score = 102 bits (112), Expect = 8e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||||| || || || |||||||| ||||| |||||||| | || || | || Sbjct 515388 AACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGACAACGTACGTCCATCT 515329 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || | ||| ||||||||||| |||| | || || || | |||| || ||| |||| | Sbjct 515328 TCTAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGAATGCCCTCTTTGT-C 515270 Query 41771 ATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 ||| |||| |||| || | | |||||| | || ||||| | |||||| || Sbjct 515269 TTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCAACCTCTAACGTTATGGT 515210 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||||| || || |||||||| |||||||| Sbjct 515209 TTTACCCGTGAGGGTTTTTACGAAGATCTGCAT 515177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461938854964400