Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq3650 237 1e-57 seq1964 89.7 4e-13 seq593 89.7 4e-13 seq2316 87.8 2e-12 >seq3650 Length=1334389 Score = 237 bits (262), Expect = 1e-57 Identities = 650/983 (66%), Gaps = 31/983 (3%) Strand=Plus/Plus Query 105528 ATAATCTACAACACCGTCCTCCCACGTGCCC--GAC----CCCGGCCCGTTGCCAGTGCC 105581 ||| || || |||||||| | ||| || || ||| || | | ||||||||||| Sbjct 960557 ATAGTCAACTACACCGTCTTGCCAAGTACCTTTGACTGGTCCAGTCGCGTTGCCAGTGAA 960616 Query 105582 GGAAAAATAGTTGTCATTCGTATAATTTGTTACGCCGGTCCAGCCGCGGCCGTACATGGC 105641 | | | |||||| |||||| ||| || || ||||||||||| |||||||| || Sbjct 960617 TGGA---TTGTTGTC-TTCGTA--ATTATGAACACCAGTCCAGCCGCGTCCGTACATAGC 960670 Query 105642 GACGCCCACAATTATTTTGTTGGGATCGACGCCTTGTTTCAGTAACGCATCGACAGCGTA 105701 |||||||| | || || || || | |||||||| || || | ||| | | Sbjct 960671 TACGCCCACCACAATCTTCTTAGGGTTCACGCCTTGAGCAAGCAAATATTTCACACCAAA 960730 Query 105702 GTGTGTAGTGTATAGCTCTTCCGAGTTCCAACTTGGCGCGTAGACTGTTGTTTGGTAGCC 105761 || || || || || | | ||||||| || ||||| | || || || | | | Sbjct 960731 GTCAGTGGTATAAGTTTCCTTAGGGTTCCAAGCGGGTGCGTAAAGTGGAGTCTGAT-GAC 960789 Query 105762 CAAATCCGT-GTTTGACCAAGCCCCTTTAAAATCGTAACTCATGAGAAATATTTTGCCTA 105820 | | || ||| ||||| || ||||||||||| |||||||| || || || | | | | Sbjct 960790 CGAGGGTGTCGTTAGACCAGGCGCCTTTAAAATCATAACTCATAAGGAAGATATGGTCCA 960849 Query 105821 ATGACTTTTGCGCTTCGGCGTAGTTTACCACGGCAATCTTGTCGTAACCCGCGCTTATAG 105880 ||||||| ||||| ||| | || || ||||| || | || || || |||| Sbjct 960850 TATACTTTTGAGCTTCACTGTAATCGACAACTTGGATCTTATCCCATCCAGCACTGATAG 960909 Query 105881 CGCTTGTTAATTCGTAAACCCTGCCGGTTTGCGCTTCG---AGGTCGTCTAGCATTGCGC 105937 || || | ||||| | | ||||| | |||| ||||||| | |||| | | Sbjct 960910 CGGAGGTCAGCTCGTATTTCTTACCGGTCT---CTTCAGAAAGGTCGTTCAACATTTCAC 960966 Query 105938 GCAGCTCCTCCAACAACAAAATGTATGTTTTGGCGTCACCGTCCGCATCGC--CCAACGA 105995 ||| |||| || || || ||| | || ||||| || || | | Sbjct 960967 GCAATTCCTTCATTAATTCAACGTAAA------CATCTCCGTCTTTCGGGCTACCGAGGT 961020 Query 105996 CGGG-TTAGCCCCTTTGCCGCCCGGAAACTCCCAATCGATGTCTACACCGTCAAAGAATT 106054 |||| ||||| || || || || || || |||||||||||||| ||||| || ||||| | Sbjct 961021 CGGGGTTAGCTCCCTTACCTCCAGGGAATTCCCAATCGATGTCAACACCATCGAAGAACT 961080 Query 106055 TCCACACTTGCAGAAATTCCTTAACCGAATCTACAAAAACGTTTCTTTTTTCAACATCG- 106113 |||| || || || || || ||||| || || | ||| || || ||| Sbjct 961081 TCCAGGTCAAGAGGAAATCTTTTACAGAATCAACGAAGCGATCTCTCTTCTCCTTGTCGG 961140 Query 106114 TGCATAAAATAAAATGGGTCTGATAGAGTCCAGCCTCCTATTGAAGGAAGAATTTTTAAA 106173 || | || | | || || || | ||| ||||| || || || ||||| || || || | Sbjct 961141 TGAAGAAGA-AGAAGGGATCGGCTAGTGTCCAACCACCGATGGAAGGTAGGATCTTAAGT 961199 Query 106174 TGGGGGTTTGCTAATTTTGCCGCCATCAACTGTCCAAAATTGCCTTTATACGGCTCGTTC 106233 | || | ||| ||| | ||||| ||| ||||| |||||||| || || |||||| Sbjct 961200 TCAGGCCTGGCTTGTTTGAGAGACATCAGCTGGCCAAAGTTGCCTTTGTAAGGTTCGTTC 961259 Query 106234 CAAGCGGACACACCTTTTTGGGGTTTTTGTACGGCGGCCCACGGATCGTGAATGGCAACT 106293 || | |||| || || || ||||| || | |||||||| ||||||||||| | ||| Sbjct 961260 CAGGAAGACAATCCCTTCTGTGGTTTCTGAAGAGCGGCCCAAGGATCGTGAATAGATACT 961319 Query 106294 TTGAAATCTTCGCGTCCCTTGCACGATCTTTGCAAAGATTCAAAGCTTCCGGGTATCGTT 106353 ||||||||||| || || |||||||||| || | || || || || || ||| | Sbjct 961320 TTGAAATCTTCTCGGCCGCTGCACGATCTCTGAAGAGCTTGGAAACTGCCTTCGATCTCT 961379 Query 106354 TTGAGGGCGTCGTTTATTCCATCGCCGCCGCAGATGGGTATGAAACCATACAACAAGTGT 106413 || | | |||||| || ||||| || ||||| || || ||||| || || | || || Sbjct 961380 TTTAAGCTGTCGTTGATGCCATCTCCACCGCAAATTGGAATGAAGCCGTATAGTAAATGA 961439 Query 106414 GATAAATTTGGCAAGGGAACTTTGTCTACGGGAAAGTTGCGCCCGTACACACCCCACTCA 106473 | | || || | ||||| || || || || || | | |||||||||||| || Sbjct 961440 GTCAGGTTAGGAATTGGAACACGATCGACTGGGAATTTTCTCGGGTACACACCCCATTCT 961499 Query 106474 ACAAAGTACGCAGCGACAATTTT 106496 || ||||| || | |||| ||| Sbjct 961500 ACGAAGTATGCTCCAACAACTTT 961522 >seq1964 Length=1360 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| |||| || |||| |||||||| || ||| ||| |||||| | Sbjct 48 ATGCAGATCTTCGTCAAGACTCTGACTGGCAAAACAATCACCCTAGAAGTTGAACCCTCG 107 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| || || || || |||||| | || ||| || Sbjct 108 GACACCATCGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 167 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 ||| | || |||||||| ||||| || |||| ||| || | ||| | |||| |||| Sbjct 168 CAACGTCTCATCTTTGCCGGCAAGCAGTTGGAGGATGGTCGTACACTCT--CCGACTACA 225 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTG 29171 | || |||||||| ||||||||||| ||||| Sbjct 226 ACATCCAGAAGGAGTCTACTCTTCATTTGGTG 257 >seq593 Length=2014934 Score = 89.7 bits (98), Expect = 4e-13 Identities = 108/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| || || || || | ||| |||||| ||| | |||||||||||||| || Sbjct 755287 AAAATTCAAGACAAGGAGGGCATTCCCCCAGATCAGCAACGTCTTATCTTTGCGGGTAAG 755228 Query 29106 CAACTGGAAGAT--TCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTC 29163 || || |||||| || | ||| | | || ||||||||||| |||||||| || |||| Sbjct 755227 CAGCTCGAAGATGGTCGCACACTTT--CAGACTACAATATTCAAAAGGAATCGACGCTTC 755170 Query 29164 ACATGGTGTTACGATTACGAGGAGG 29188 || |||| | || ||| ||||||| Sbjct 755169 ACTTGGTTCTTCGTTTAAGAGGAGG 755145 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | || || ||||| ||||| || || || || || || | Sbjct 755599 ATGCAGATCTTCGTTAAGACCTTGACAGGCAAGACTATCACATTAGAGGTTGAGCCATCT 755540 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| ||||| || |||||||| | ||| ||| || Sbjct 755539 GACACAATTGAAAATGTTAAGGCTAAAATCCAAGACAAAGAAGGCATTCCCCCAGACCAG 755480 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | |||||||| |||||||| || |||||| || || | |||||||| Sbjct 755479 CAGAGATTGATCTTTGCTGGCAAACAGCTTGAAGATGGACGCACATTGTCAGATTACAAC 755420 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||| ||||||||||||||| | ||| | || | ||||||| Sbjct 755419 ATCCAGAAAGAATCTACTCTTCACTTAGTGCTCCGTCTTAGAGGAGG 755373 >seq2316 Length=6356476 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 || |||||| || ||| | ||||| | ||||| |||||||| || || ||| | Sbjct 2659341 AACAATGCAGATCTTCGTAAAAACCCTCACGGGTAAAACCATAACGTTAGAGGTTGAAGC 2659400 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | | || || | | || | || |||||| || ||||| || | ||| ||| Sbjct 2659401 CTCTGACACTATTGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCCCCAGA 2659460 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 ||| ||||| | ||||| || |||||||| | |||||| || || |||| || Sbjct 2659461 TCAGCAAAGGTTGATCTTCGCCGGCAAACAGTTAGAAGATGGACGTACATTGTCCGACTA 2659520 Query 29138 CAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||| || ||||||||||| || |||||| ||||||| | | |||||||| Sbjct 2659521 CAACATCCAGAAGGAATCAACACTTCACTTGGTGTTGAGGCTGCGAGGAGG 2659571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428315776383470