Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq3650 250 2e-61 seq593 116 3e-21 seq3450 93.3 4e-14 >seq3650 Length=1334389 Score = 250 bits (276), Expect = 2e-61 Identities = 594/883 (67%), Gaps = 25/883 (3%) Strand=Plus/Plus Query 102164 ACGCCCGTCCACCCGCGGCCGTACATGGCGACGCCCACGATGAGTTTGTGGGCCGCTACG 102223 || || ||||| ||||| |||||||| || |||||||| | | || | | ||| Sbjct 960642 ACACCAGTCCAGCCGCGTCCGTACATAGCTACGCCCACCACAATCTTCTTAGGGTTCACG 960701 Query 102224 CCTTGGCCCGTGAGCAACT---TCACGGCGTGGTCGGTGGTGTACAGCTCGTTGGCGTTC 102280 ||||| | ||||| | |||| | ||| ||||| || || || | |||| Sbjct 960702 CCTTGAGCA---AGCAAATATTTCACACCAAAGTCAGTGGTATAAGTTTCCTTAGGGTTC 960758 Query 102281 CAACTGGGCGCGTACAGCGTGGTCTGGTAGCCCAAATCCGT-GTTGGACCACGCGCCCTT 102339 ||| ||| ||||| || | ||||| | | || | || ||| ||||| ||||| || Sbjct 960759 CAAGCGGGTGCGTAAAGTGGAGTCTGAT-GACCGAGGGTGTCGTTAGACCAGGCGCCTTT 960817 Query 102340 AAAATCGTAACTCATGAGGAATATTTTATCAAGGAACCTTTGAGCCGCGTCGTACTTCAC 102399 |||||| |||||||| ||||| || | || | || ||||||| | ||| | || Sbjct 960818 AAAATCATAACTCATAAGGAAGATATGGTCCATATACTTTTGAGCTTCACTGTAATCGAC 960877 Query 102400 CACGGCAATTTTGTCGTAGCCCGAACTAATCGCGCTCGTCAGCTCGTACGTCTT---GTT 102456 || || || || | || | ||| || ||| ||||||||||| |||| | | Sbjct 960878 AACTTGGATCTTATCCCATCCAGCACTGATAGCGGAGGTCAGCTCGTATTTCTTACCGGT 960937 Query 102457 CGTTTGCAGCTGCAGTTCGTCCAGCATGGCGCGCAACTCTTTCAGCAAAACAAGGTACGT 102516 | || ||| || |||| || ||| | ||||| || |||| || ||| ||| Sbjct 960938 CTCTT-CAGAA--AGGTCGTTCAACATTTCACGCAATTCCTTCATTAATTCAACGTAAAC 960994 Query 102517 GTCGGCGTCGCGCTCGCCGTTGCCGAGCGCCGGGTTGGCGCCCTTGCCGCCCGGAAACTC 102576 || |||| | || | ||||| | ||||| || ||||| || || || || || Sbjct 960995 ATCTCCGTCTTTCGGGC---TACCGAGGTCGGGGTTAGCTCCCTTACCTCCAGGGAATTC 961051 Query 102577 CCAATCGATGTCCACCCCGTCGAAAAACTTCCACACCTGCAAAAACTCTTTAACGGATTC 102636 |||||||||||| || || ||||| |||||||| | | || ||||| || || || Sbjct 961052 CCAATCGATGTCAACACCATCGAAGAACTTCCAGGTCAAGAGGAAATCTTTTACAGAATC 961111 Query 102637 GACAAACACGCGC-CGCTTGTCCGCGTCGTGCATGAAATAGAACGGGTCGGACAGCGTCC 102695 || || || | | ||| ||| |||| | ||| |||| || |||| || |||| Sbjct 961112 AACGAAG-CGATCTCTCTTCTCCTTGTCGGTGAAGAAGAAGAAGGGATCGGCTAGTGTCC 961170 Query 102696 AGCCGCCAATGGACGGCAGGATTTTCAAATGCGGGTTTGCCAGCTTGGCCGCCATCAACT 102755 | || || ||||| || ||||| || | | || | || | ||| | ||||| || Sbjct 961171 AACCACCGATGGAAGGTAGGATCTTAAGTTCAGGCCTGGCTTGTTTGAGAGACATCAGCT 961230 Query 102756 GGCCAAAGTTGCCTTTGTAGGGCTCGTTCCATGCGGATACGCCCTTTTGCGGCTTTTGTA 102815 ||||||||||||||||||| || |||||||| | || | ||||| || || || || | Sbjct 961231 GGCCAAAGTTGCCTTTGTAAGGTTCGTTCCAGGAAGACAATCCCTTCTGTGGTTTCTGAA 961290 Query 102816 TGGCGGCCCACGGGTCGTGGATAGCGACCTTAAAGTCTGCGCGGCCTTTGCACGAGCGCT 102875 |||||||| || ||||| |||| || || || ||| | ||||| ||||||| | || Sbjct 961291 GAGCGGCCCAAGGATCGTGAATAGATACTTTGAAATCTTCTCGGCCGCTGCACGATCTCT 961350 Query 102876 GCAGCGCTTCAAAACTGCC-GGGAATGGTCTTGAGCGCGTCGTTTAGCCCGTCGCCGCCG 102934 | || |||| |||||||| || | || ||| |||||| | || || || ||| Sbjct 961351 GAAGAGCTTGGAAACTGCCTTCGATCTCTTTTAAGC-TGTCGTTGATGCCATCTCCACCG 961409 Query 102935 CAAATCGGGATGAAGCCGTACAGCAGATGGGACAGGTTGGGCAGCGGCACTTTGTCCACC 102994 ||||| || ||||||||||| || | ||| | |||||| || | || || || || Sbjct 961410 CAAATTGGAATGAAGCCGTATAGTAAATGAGTCAGGTTAGGAATTGGAACACGATCGACT 961469 Query 102995 GGAAA--GCCGCGGCCGTACACGCCCCACTCTACGAAATACGC 103035 || || | ||| |||||| ||||| |||||||| || || Sbjct 961470 GGGAATTTTCTCGG--GTACACACCCCATTCTACGAAGTATGC 961510 >seq593 Length=2014934 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | ||| |||| || | || || |||||||| ||||| ||||| | Sbjct 754917 CCACCTCGCAGACGGAGTACCAAGTGAAGTGTTGATTCCTTTTGGATGTTGTAGTCAGAA 754976 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||| ||||||||||| ||| | || | |||||||||||| ||| Sbjct 754977 AGGGTACGGCCATCCTCTAGCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGG 755036 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||| || || |||||| ||| || | | | |||||| || || Sbjct 755037 ATACCTTCTTTATCCTGGATCTTGGCTTTGACATTCTCAATGGTATCAGAAGGTTCAACC 755096 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||||||||| || || || || || || |||||||| Sbjct 755097 TCCAAGGTGATGGTCTTGCCTGTCAAAGTCTTCACGAAAATTTGCAT 755143 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | ||||| ||||| |||||||| ||||||||||| | | Sbjct 755601 CCACCACGGAGACGGAGTACTAAATGCAGGGTGGATTCCTTTTGGATGTTATAGTCGGAC 755660 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | || |||| |||||| || || | || || | ||||||||| ||| Sbjct 755661 AATGTGCGTCCATCTTCCAACTGTTTACCGGCGAAGATGAGACGCTGCTGGTCTGGGGGA 755720 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||||||| || || | | | || || |||||| Sbjct 755721 ATGCCCTCCTTGTCTTGGATCTTTGCCTTAACATTCTCAATTGTGTCTGAAGGCTCCACC 755780 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 |||| ||| ||||||||||| || || || || ||||| || ||||| ||| Sbjct 755781 TCCAAGGTGATGGTCTTGCCTGTCAATGTCTTCACAAAAATCTGCATCTTG 755831 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045 ||||||| ||||| ||||| | ||||| || | ||||| ||||||||||| ||| | | Sbjct 754726 CCTTTTGGATGTTGTAGTCAGAAAGGGTACGGCCATCCTCTAGCTGTTTGCCAGCAAAGA 754785 Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105 | | |||||||||||| ||| | ||||||||||| |||||| || || | Sbjct 754786 TCAATCTCTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCT 754845 Query 21106 CGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAA 21165 ||| || || ||| || ||| | || || |||||||| || | ||||| |||| Sbjct 754846 CGATGGTGTCCGAGGGTTCTACTTCTAATGTGATAGTCTTGCCTGTCAGGGTTTTAACAA 754905 Query 21166 ATATTTGCAT 21175 | || ||||| Sbjct 754906 AGATCTGCAT 754915 >seq3450 Length=502752 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 23617 CCAATGATGCCGCAGCCCAGCCGGCCGCCAGAATTGCCCGTGGTCTTGCTGAGCGGGTGC 23676 || |||| |||||| | | || |||| | ||||| ||||||||||||||| ||| Sbjct 191671 CCTATGACCCCGCAGGCGATGCGCGCGCCCGCGTTGCCGGTGGTCTTGCTGAGCTCGTGG 191730 Query 23677 TCGCCGAGGCCCAGGTCATCGCGGTCCGTGTGCACGACCAGGCTGCGGCCCAATATACTC 23736 |||||| ||| ||||| ||| |||||| |||||| ||||| |||| || | ||| || Sbjct 191731 CCGCCGATGCCGAGGTCGTCGGGGTCCGCGTGCACCACCAGCGTGCGCCCGATTATGCTG 191790 Query 23737 AACGGCCCAAACAGGG 23752 ||| ||| |||||| Sbjct 191791 TTCGGTCCAGACAGGG 191806 Score = 89.7 bits (98), Expect = 4e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 23811 GTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGCGTCGGGCGCGCCGTGTCTCTGGCGGGT 23870 |||||| || |||||||| || ||| | | |||| |||||||||||| ||| Sbjct 192360 GTTGCCGAGATCGCCGACATGGCGCACGGTGGCGGTGGGCGCGCCGTGCTCCTGCTTCCC 192419 Query 23871 GGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGTGCAC 23930 ||||| ||||| |||| ||||||||||||||||| || |||| || || || ||||| Sbjct 192420 TGGGTTGAAGTGTGCGCCGGCGGACGTGCAGCCGTTTGTGTTGTCACCAAACTCATGCAC 192479 Query 23931 GTGAAAACCGTG 23942 || ||||| || Sbjct 192480 ATGGAAACCATG 192491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422239263295784