Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq3650 248 7e-61 seq593 89.7 4e-13 seq1964 84.2 2e-11 >seq3650 Length=1334389 Score = 248 bits (274), Expect = 7e-61 Identities = 594/891 (67%), Gaps = 17/891 (2%) Strand=Plus/Plus Query 97380 ACGCCGGTCCAGCCGCGGCCGTACATGGCGACGCCCACAATTATTTTGTTGGGATCGACG 97439 || || ||||||||||| |||||||| || |||||||| | || || || || | ||| Sbjct 960642 ACACCAGTCCAGCCGCGTCCGTACATAGCTACGCCCACCACAATCTTCTTAGGGTTCACG 960701 Query 97440 CCTTGTTCCAGTAACGCATCGACAGCGTAATGTGTAGTGTACAGCTCTTCCGAGTTCCAA 97499 ||||| | || || | ||| | | | || || || || | | ||||||| Sbjct 960702 CCTTGAGCAAGCAAATATTTCACACCAAAGTCAGTGGTATAAGTTTCCTTAGGGTTCCAA 960761 Query 97500 CTTGGCGCGTAGACTGTTGTTTGGTAGCCCAAATCCGT-GTTTGACCAAGCCCCTTTAAA 97558 || ||||| | || || || | | || | || ||| ||||| || |||||||| Sbjct 960762 GCGGGTGCGTAAAGTGGAGTCTGAT-GACCGAGGGTGTCGTTAGACCAGGCGCCTTTAAA 960820 Query 97559 ATCGTAAGTCATGAGAAATATTTTGTCTAATGACTTTTGCGCTTCGGCGTAGTTTACCAC 97618 ||| ||| |||| || || || | ||| | ||||||| ||||| ||| | || || Sbjct 960821 ATCATAACTCATAAGGAAGATATGGTCCATATACTTTTGAGCTTCACTGTAATCGACAAC 960880 Query 97619 GGCAATCTTGTCGTAGCCCGCGCTTATAGCGCTTGTTAATTCGTAAACCCTGCCGGTTTG 97678 ||||| || | || || || |||||| || | ||||| | | ||||| | Sbjct 960881 TTGGATCTTATCCCATCCAGCACTGATAGCGGAGGTCAGCTCGTATTTCTTACCGGTCT- 960939 Query 97679 CACTTCG---AGGTCGTCTAGCATTTCGCGCAGCTCATCCAACAACAGAATGTATGTTTT 97735 |||| ||||||| | |||||| |||| || | || || || ||| | Sbjct 960940 --CTTCAGAAAGGTCGTTCAACATTTCACGCAATTCCTTCATTAATTCAACGTAAACATC 960997 Query 97736 GGCGTCACGCTCCGCATCGCCCAGCGACGGGTTAGCCCCTTTGCCGCCCGGAAATTCCCA 97795 |||| || | | || || |||||||| || || || || || |||||||| Sbjct 960998 TCCGTCTT--TCGGGCTA-CCGAGGTCGGGGTTAGCTCCCTTACCTCCAGGGAATTCCCA 961054 Query 97796 ATCGACGTCGACACCATCAAAAAATTTCCA---CACTTGCAAAAATTCCTTAACCGACTC 97852 ||||| ||| |||||||| || || ||||| || | ||| || || || || || Sbjct 961055 ATCGATGTCAACACCATCGAAGAACTTCCAGGTCAAGAGGAAA---TCTTTTACAGAATC 961111 Query 97853 TACAAAAACGTTTCTTTTTTCAACGTCGTGCATGAAATAGAACGGGTCCGACAGAGTCCA 97912 || || | ||| || || |||| | ||| |||| || || | || ||||| Sbjct 961112 AACGAAGCGATCTCTCTTCTCCTTGTCGGTGAAGAAGAAGAAGGGATCGGCTAGTGTCCA 961171 Query 97913 GCCTCCTATTGAAGGAAGAATTTTTAGATGTGGGTTTGCTAATTTCGCCGCCATCAATTG 97972 || || || ||||| || || || || | || | ||| ||| | ||||| || Sbjct 961172 ACCACCGATGGAAGGTAGGATCTTAAGTTCAGGCCTGGCTTGTTTGAGAGACATCAGCTG 961231 Query 97973 TCCAAAATTGCCTTTGTACGGTTCGTTCCAAGCGGACACGCCCTTTTGGGGTTTTTGTAC 98032 ||||| ||||||||||| ||||||||||| | |||| ||||| || ||||| || | Sbjct 961232 GCCAAAGTTGCCTTTGTAAGGTTCGTTCCAGGAAGACAATCCCTTCTGTGGTTTCTGAAG 961291 Query 98033 GGCGGCCCACGGATCGTGGATGGCAACTTTGAAATCTTCGCGTCCCCTGCACGATCGTTG 98092 |||||||| |||||||| || | |||||||||||||| || || |||||||||| || Sbjct 961292 AGCGGCCCAAGGATCGTGAATAGATACTTTGAAATCTTCTCGGCCGCTGCACGATCTCTG 961351 Query 98093 CAGAGCTTCAAAACTTCCGGGTATTGTTTTGAGGGCGTCGTTTATTCCATCGCCACCGCA 98152 ||||||| ||||| || || ||| | | |||||| || ||||| |||||||| Sbjct 961352 AAGAGCTTGGAAACTGCCTTCGATCTCTTTTAAGCTGTCGTTGATGCCATCTCCACCGCA 961411 Query 98153 GATGGGTATGAAACCGTACAACAAGTGCGATAAATTTGGCAAGGGAACTTTGTCTACGGG 98212 || || ||||| ||||| | || || | | || || | ||||| || || || Sbjct 961412 AATTGGAATGAAGCCGTATAGTAAATGAGTCAGGTTAGGAATTGGAACACGATCGACTGG 961471 Query 98213 AAAGCTGCGCCCGTACACACCCCACTCGACAAAGTACGCAGCGACAATTTT 98263 || | | | |||||||||||| || || ||||| || | |||| ||| Sbjct 961472 GAATTTTCTCGGGTACACACCCCATTCTACGAAGTATGCTCCAACAACTTT 961522 >seq593 Length=2014934 Score = 89.7 bits (98), Expect = 4e-13 Identities = 108/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| || || || || | ||| |||||| ||| | |||||||||||||| || Sbjct 755287 AAAATTCAAGACAAGGAGGGCATTCCCCCAGATCAGCAACGTCTTATCTTTGCGGGTAAG 755228 Query 25179 CAATTGGAAGAT--TCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTC 25236 || | |||||| || | ||| | | || |||||||||||||||||||| || |||| Sbjct 755227 CAGCTCGAAGATGGTCGCACACTTT--CAGACTACAATATTCAAAAGGAATCGACGCTTC 755170 Query 25237 ACATGGTGTTACGATTACGAGGAGG 25261 || |||| | || ||| ||||||| Sbjct 755169 ACTTGGTTCTTCGTTTAAGAGGAGG 755145 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | || || ||||| ||||| ||||| ||| || ||||| | Sbjct 755143 ATGCAAATTTTCGTGAAGACTTTGACAGGCAAGACCATCACCTTGGAGGTTGAACCTTCT 755084 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || |||| || || |||||||||||| | ||| ||| || Sbjct 755083 GATACCATTGAGAATGTCAAAGCCAAGATCCAGGATAAAGAAGGTATCCCCCCAGACCAG 755024 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||| | |||||||| |||||||| | || ||| | || | | || ||||| Sbjct 755023 CAGAGATTGATCTTTGCTGGCAAACAGCTAGAGGATGGCCGTACCCTTTCTGACTACAAC 754964 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||||||||| || |||||| |||| | || | ||||| || Sbjct 754963 ATCCAAAAGGAATCAACACTTCACTTGGTACTCCGTCTGCGAGGTGG 754917 >seq1964 Length=1360 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| |||| || |||| |||||||| || ||| ||| |||||| | Sbjct 48 ATGCAGATCTTCGTCAAGACTCTGACTGGCAAAACAATCACCCTAGAAGTTGAACCCTCG 107 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| || || || || |||||| | || ||| || Sbjct 108 GACACCATCGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 167 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212 ||| | || |||||||| ||||| || ||||| ||| || | ||| | |||| |||| Sbjct 168 CAACGTCTCATCTTTGCCGGCAAGCAGTTGGAGGATGGTCGTACACTCT--CCGACTACA 225 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTG 25244 | || || ||||| ||||||||||| ||||| Sbjct 226 ACATCCAGAAGGAGTCTACTCTTCATTTGGTG 257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410777404485836