Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3650 159 4e-34 seq2316 134 1e-26 seq1964 129 6e-25 seq348 104 2e-17 seq802 100 3e-16 seq593 96.9 4e-15 seq3450 91.5 2e-13 >seq3650 Length=1334389 Score = 159 bits (176), Expect = 4e-34 Identities = 253/360 (70%), Gaps = 2/360 (1%) Strand=Plus/Plus Query 65660 AACGGATCGGACAGGGTCCAGCCGCCGATGGAGGGCAGCACGCGCAGGTGCGGGTGCGCC 65719 || ||||||| || ||||| || |||||||| || || | | | || | || | | Sbjct 961152 AAGGGATCGGCTAGTGTCCAACCACCGATGGAAGGTAGGAT-CTTAAGTTCAGGCCTGGC 961210 Query 65720 TTCTT-GATGGCCATCAGCTGGCCGAAGTTGCCCTTGTACGGCTCGCTCCACGCGGTCAC 65778 || || || | |||||||||||| |||||||| ||||| || ||| |||| | | || Sbjct 961211 TTGTTTGAGAGACATCAGCTGGCCAAAGTTGCCTTTGTAAGGTTCGTTCCAGGAAGACAA 961270 Query 65779 GCCCTTTTGCGGCTTCTGCACGGCCGCCCACGGGTCGTGCACCGCCAGCTTGAAGTCGTC 65838 ||||| || || ||||| | || ||||| || ||||| | | | ||||| || || Sbjct 961271 TCCCTTCTGTGGTTTCTGAAGAGCGGCCCAAGGATCGTGAATAGATACTTTGAAATCTTC 961330 Query 65839 GCGGCCCGCGCACGAGCGCTGCAGCGCCTCGAAGCTGCCCGCGATGGACTTGAGGCTGTC 65898 ||||| |||||| | ||| || || | ||| ||||| |||| || | |||||| Sbjct 961331 TCGGCCGCTGCACGATCTCTGAAGAGCTTGGAAACTGCCTTCGATCTCTTTTAAGCTGTC 961390 Query 65899 GTTGATGCCGTCCCCGCCGCACATCGGCACGAAGCCGTACAGCAGATGCGTGAGGTTGGG 65958 ||||||||| || || ||||| || || | ||||||||| || | ||| || ||||| || Sbjct 961391 GTTGATGCCATCTCCACCGCAAATTGGAATGAAGCCGTATAGTAAATGAGTCAGGTTAGG 961450 Query 65959 CACGGGCACCTTGTCGGCGGGAAAGTCGCGCCCGTACACGCCCCACTCGACGAAGTAGGC 66018 | || || ||| | || || | | | |||||| ||||| || |||||||| || Sbjct 961451 AATTGGAACACGATCGACTGGGAATTTTCTCGGGTACACACCCCATTCTACGAAGTATGC 961510 >seq2316 Length=6356476 Score = 134 bits (148), Expect = 1e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 || |||||| || ||||||||||| |||||||| |||||||| || | || || ||||| Sbjct 2659341 AACAATGCAGATCTTCGTAAAAACCCTCACGGGTAAAACCATAACGTTAGAGGTTGAAGC 2659400 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | | |||| | ||| | || | ||||||| |||||||||||||| ||| | || Sbjct 2659401 CTCTGACACTATTGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCCCCAGA 2659460 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | | |||| ||| ||||||||| | || || | || || | |||||| Sbjct 2659461 TCAGCAAAGGTTGATCTTCGCCGGCAAACAGTTAGAAGATGGACGTACATTGTCCGACTA 2659520 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 ||||||||||||||| | || || || | |||||| Sbjct 2659521 CAACATCCAGAAGGAATCAACACTTCACTTGGTGTTG 2659557 >seq1964 Length=1360 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || |||||||| |||||| | || || ||| || | Sbjct 48 ATGCAGATCTTCGTCAAGACTCTGACTGGCAAAACAATCACCCTAGAAGTTGAACCCTCG 107 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| || || ||||| | |||||| Sbjct 108 GACACCATCGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 167 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| || ||||| ||| |||| || | || || ||| |||||||||| Sbjct 168 CAACGTCTCATCTTTGCCGGCAAGCAGTTGGAGGATGGTCGTACACTCTCCGACTACAAC 227 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 |||||||||||| | || || ||| | ||| | || | | ||||||| Sbjct 228 ATCCAGAAGGAGTCTACTCTTCATTTGGTGCTTCGTCTCCGCGGCGGCG 276 >seq348 Length=4065129 Score = 104 bits (114), Expect = 2e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || || ||| |||| || || || || || ||||| || |||||||| ||||| || || Sbjct 3296812 GAACCACTGTTGCGTGAAAATCCTCGGCGTTTCGTCATCTTCCCCATCCAATATCCTGAT 3296871 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||||||||| || || || |||||||| || ||||| || || || Sbjct 3296872 ATCTGGCAAATGTACAAAAAGGCAGAAGCTTCATTCTGGACAGTGGAGGAAGTTGATCTA 3296931 Query 116696 TCCAAGG 116702 ||||||| Sbjct 3296932 TCCAAGG 3296938 >seq802 Length=1346568 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| |||||||| |||||||||||| |||| || ||| || Sbjct 833294 AAGATGCAGATTTTCGTGAAAACCCTCACGGGGAAAACCATCACCCTCGAGGTTGAACCC 833235 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | ||| |||| | |||||||| ||||||||||| ||||| | ||| Sbjct 833234 TCGGATACCATTGAAAATGTCAAAGCAAAAATTCAAGACAAAGAGGGAATCCCTCCAGAC 833175 Query 40807 CAGCA 40811 ||||| Sbjct 833174 CAGCA 833170 >seq593 Length=2014934 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || ||||| ||||||||| | || || ||| | | Sbjct 755143 ATGCAAATTTTCGTGAAGACTTTGACAGGCAAGACCATCACCTTGGAGGTTGAACCTTCT 755084 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| | || || | || ||||| || |||||| | |||||| Sbjct 755083 GATACCATTGAGAATGTCAAAGCCAAGATCCAGGATAAAGAAGGTATCCCCCCAGACCAG 755024 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| || ||||||||||| || || | || ||||| ||||||||| Sbjct 755023 CAGAGATTGATCTTTGCTGGCAAACAGCTAGAGGATGGCCGTACCCTTTCTGACTACAAC 754964 Query 40870 ATCCAGAAGGA 40880 ||||| ||||| Sbjct 754963 ATCCAAAAGGA 754953 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || || ||||| || ||||| | || || ||| || | Sbjct 754915 ATGCAGATCTTTGTTAAAACCCTGACAGGCAAGACTATCACATTAGAAGTAGAACCCTCG 754856 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| || || |||||| | |||||| Sbjct 754855 GACACCATCGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAG 754796 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| || ||||||||||| || || | || ||||| ||||||||| Sbjct 754795 CAGAGATTGATCTTTGCTGGCAAACAGCTAGAGGATGGCCGTACCCTTTCTGACTACAAC 754736 Query 40870 ATCCAGAAGG 40879 ||||| |||| Sbjct 754735 ATCCAAAAGG 754726 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| || ||||| | || || || |||| | Sbjct 755599 ATGCAGATCTTCGTTAAGACCTTGACAGGCAAGACTATCACATTAGAGGTTGA-GCCATC 755541 Query 40750 -GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | ||| | |||| ||||| | |||||||| ||||| ||| | ||||| Sbjct 755540 TGACACAATTGAAAATGTTAAGGCTAAAATCCAAGACAAAGAAGGCATTCCCCCAGACCA 755481 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || ||||||||||| || || | ||||| | || ||||| Sbjct 755480 GCAGAGATTGATCTTTGCTGGCAAACAGCTTGAAGATGGACGCACATTGTCAGATTACAA 755421 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||| || | || || || ||||| Sbjct 755420 CATCCAGAAAGAATCTACTCTTCACTTAGTG 755390 >seq3450 Length=502752 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 139379 CACGGCTTCCACGTGCACGAGTTCGGCGACGCGAGCAACGGGTGCACGTCGGCCGGCGAG 139438 || || ||||| ||||| ||||| || ||| | ||||| |||||||| ||||||| Sbjct 192491 CATGGTTTCCATGTGCATGAGTTTGGTGACAACACAAACGGCTGCACGTCCGCCGGCGCA 192432 Query 139439 CACTTCAACCCCGCGCGCCGGGACCACGGCGCGCCCGACGCCGAGATCAGGCACGTCGGC 139498 ||||||||||| | | | ||| |||||||||||| |||| | | || |||||| Sbjct 192431 CACTTCAACCCAGGGAAGCAGGAGCACGGCGCGCCCACCGCCACCGTGCGCCATGTCGGC 192372 Query 139499 GACCTGGGCAACCTCGAG 139516 || || |||||| ||||| Sbjct 192371 GATCTCGGCAACATCGAG 192354 Score = 89.7 bits (98), Expect = 5e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 139568 TCCCTGTACGGTCCGCACAGCATCATCGGACGGAGTCTGGTCGTGCACACGGACAGGGAC 139627 ||||||| || ||| ||||||| ||||| || | ||||| |||||| ||||| ||| Sbjct 191807 TCCCTGTCTGGACCGAACAGCATAATCGGGCGCACGCTGGTGGTGCACGCGGACCCCGAC 191748 Query 139628 GATCTGGGCCTCACCGACCATCCATTGAGCAAGACCACCGGCAACTCGGGCGGCCGGCTC 139687 || || ||| || || ||| | |||||||||||||||||| |||||| || || Sbjct 191747 GACCTCGGCATCGGCGGCCACGAGCTCAGCAAGACCACCGGCAACGCGGGCGCGCGCATC 191688 Query 139688 GCGTGCGGCATCATCGG 139704 || ||||| |||| || Sbjct 191687 GCCTGCGGGGTCATAGG 191671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515194250510240