Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq2316 134 2e-26 seq593 134 2e-26 >seq2316 Length=6356476 Score = 134 bits (148), Expect = 2e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 |||||||| || || |||| || || || || ||||| ||||| ||||| ||||||| Sbjct 2659342 ACAATGCAGATCTTCGTAAAAACCCTCACGGGTAAAACCATAACGTTAGAGGTTGAAGCC 2659401 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 ||| || ||| ||| ||||| |||||||||||| ||||| || || || || ||| Sbjct 2659402 TCTGACACTATTGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCCCCAGAT 2659461 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || |||||| | || || || || ||||| ||||| ||| | || ||||| || || Sbjct 2659462 CAGCAAAGGTTGATCTTCGCCGGCAAACAGTTAGAAGATGGACGTACATTGTCCGACTAC 2659521 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTA 124767 || || || || |||||||| | || ||||| || | | ||||| |||| Sbjct 2659522 AACATCCAGAAGGAATCAACACTTCACTTGGTGTTGAGGCTGCGAGGAGGTA 2659573 >seq593 Length=2014934 Score = 134 bits (148), Expect = 2e-26 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | || || |||||||| || ||||| || | ||| | || || Sbjct 755372 AATGCAGATTTTTGTTAAAACGCTAACAGGAAAGACTATCACACTGGAGGTGGAGCCATC 755313 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || |||||| ||| ||||| |||||||||||| || || || || || || ||||| Sbjct 755312 AGACACAATTGAGAATGTAAAAGCGAAAATTCAAGACAAGGAGGGCATTCCCCCAGATCA 755253 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | ||||| ||||| || || || | || ||| |||| ||| | ||| || || Sbjct 755252 GCAACGTCTTATCTTTGCGGGTAAGCAGCTCGAAGATGGTCGCACACTTTCAGACTACAA 755193 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||||||| ||||| || | || |||||| | |||||| |||| || || ||| || Sbjct 755192 TATTCAAAAGGAATCGACGCTTCACTTGGTTCTTCGTTTAAGAGGAGGCATGCAAATTT 755134 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| | |||||||| || || || | ||| ||||| | | Sbjct 755143 ATGCAAATTTTCGTGAAGACTTTGACAGGCAAGACCATCACCTTGGAGGTTGAACCTTCT 755084 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| || || || |||||||||||||| || || || || Sbjct 755083 GATACCATTGAGAATGTCAAAGCCAAGATCCAGGATAAAGAAGGTATCCCCCCAGACCAG 755024 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | || ||||| || ||||| |||||||| | || || | || || || Sbjct 755023 CAGAGATTGATCTTTGCTGGCAAACAGCTAGAGGATGGCCGTACCCTTTCTGACTACAAC 754964 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| |||||||| | || ||||| | ||| | ||||||||||| Sbjct 754963 ATCCAAAAGGAATCAACACTTCACTTGGTACTCCGTCTGCGAGGTGGTAT 754914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755419417043200