Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3650 217 1e-51 seq2316 125 6e-24 seq593 120 3e-22 seq3450 95.1 1e-14 seq802 87.8 2e-12 >seq3650 Length=1334389 Score = 217 bits (240), Expect = 1e-51 Identities = 348/495 (70%), Gaps = 6/495 (1%) Strand=Plus/Minus Query 21581 GCCTACTTTGTCGAATGGGGAGTGTACCTGAGACAGTTCCCCGTCGACAAGGTGCCGGCG 21640 || ||||| || |||||||| ||||||| |||| | ||||| ||||| || || Sbjct 961510 GCATACTTCGTAGAATGGGGTGTGTACCCGAGAAAATTCCCAGTCGATCGTGTTCCAATT 961451 Query 21641 CCGAATCTATCACATATACTATACGGCTTCGTGCCGATATGCGGAGGCGACGGCATCAAC 21700 || || || | ||| |||||||||||||| | || || ||||| || || ||||||||| Sbjct 961450 CCTAACCTGACTCATTTACTATACGGCTTCATTCCAATTTGCGGTGGAGATGGCATCAAC 961391 Query 21701 GACGCGCTAAAAACGGTGCCTGGCAGTTTTGAGGCATTGCAACGTTCGTGTGCGGGTCGG 21760 ||| ||||| | | |||||||| | || | || | ||||| || || Sbjct 961390 GACAGCTTAAAAGAGATCGAAGGCAGTTTCCAAGCTCTTCAGAGATCGTGCAGCGGCCGA 961331 Query 21761 GCCGATTTCAAGGTGGCTATACACGATCCGTGGGCCGCAATACAAAAGCCCCAAAAGGGC 21820 | |||||||| || |||| |||||||| |||||||| | || || || || ||||| Sbjct 961330 GAAGATTTCAAAGTATCTATTCACGATCCTTGGGCCGCTCTTCAGAAACCACAGAAGGGA 961271 Query 21821 GTCTCGTCATGGAACGAACCGTACAAAGGCAACTTTGGTCAACTGATGGCAATGAAGAGG 21880 | || || ||||||||||| ||||||||||||||||| || |||||| | | || Sbjct 961270 TTGTCTTCCTGGAACGAACCTTACAAAGGCAACTTTGGCCAGCTGATGTCTCTCAAACAA 961211 Query 21881 GCCAATCCTCACATTAAAGTGTTCGCATCGATCGGCGGATGGACTCTGTCCGATCCATTT 21940 |||| ||| | |||| | | | || ||||| || ||||| || ||||||| || Sbjct 961210 GCCAGGCCTGAACTTAAGATCCTACCTTCCATCGGTGGTTGGACACTAGCCGATCCCTTC 961151 Query 21941 TATCATATGCA-CGAC--GCCGACGTCAGACGGGTGTTTATCGATTCAGTTGAAGAATTT 21997 | || | | || |||| | || | ||| | || | ||||| || |||| || Sbjct 961150 T-TCTTCTTCACCGACAAGGAGAAGAGAGATCG--CTTCGTTGATTCTGTAAAAGATTTC 961094 Query 21998 CTGCTCACGTGGAAGTTCTATGACGGCGTCCACATCGATTGGGAGTTTCCCGGCGGCAAG 22057 || | || |||||||||| || || || ||||||||||||| || || || || ||| Sbjct 961093 CTCTTGACCTGGAAGTTCTTCGATGGTGTTGACATCGATTGGGAATTCCCTGGAGGTAAG 961034 Query 22058 GGAGCCAACCCCGAC 22072 ||||| ||||||||| Sbjct 961033 GGAGCTAACCCCGAC 961019 >seq2316 Length=6356476 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | |||||||||||||| | ||| || || || || |||||||| ||| Sbjct 2659573 TACCTCCTCGCAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGG 2659514 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || ||| || | |||||| || ||| |||| | | |||||||| || | Sbjct 2659513 ACAATGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAACCTTTGCTGATCTGGGG 2659454 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | |||||||| |||||| |||||| ||| || | ||| | ||||| | | || | Sbjct 2659453 GAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCAATAGTGTCAGAGGCTTCAA 2659394 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | || | ||||| || || || |||||||| || |||||||| Sbjct 2659393 CCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCAT 2659345 >seq593 Length=2014934 Score = 120 bits (132), Expect = 3e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| | ||| | | |||||||| | || || || |||||||| ||||| || | Sbjct 755145 CCTCCTCTTAAACGAAGAACCAAGTGAAGCGTCGATTCCTTTTGAATATTGTAGTC--TG 755202 Query 118572 ATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||| ||| ||| |||||||| || || || |||| ||||| |||||||| || | Sbjct 755203 AAAGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGG 755262 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||||||||||||| |||||| ||| || | || | ||||| | ||| | Sbjct 755263 GAATGCCCTCCTTGTCTTGAATTTTCGCTTTTACATTCTCAATTGTGTCTGATGGCTCCA 755322 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | || | || || || || || ||||| |||||||||||||| Sbjct 755323 CCTCCAGTGTGATAGTCTTTCCTGTTAGCGTTTTAACAAAAATCTGCAT 755371 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || ||||| ||||| || ||| || ||||| ||| || | |||||| || Sbjct 755631 GTGGATTCCTTTTGGATGTTATAGTCGGACAATGTGCGTCCATCTTCCAACTGTTTACCG 755690 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||||||||||||||| || || || ||||||||||||||| || ||| ||| Sbjct 755691 GCGAAGATGAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTTGCCTTA 755750 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||||| | ||| ||||| | ||| | || ||||| |||| || Sbjct 755751 ACATTCTCAATTGTGTCTGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCTGTCAATGTC 755810 Query 118722 TTTACAAAAATCTGCAT 118738 || |||||||||||||| Sbjct 755811 TTCACAAAAATCTGCAT 755827 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| ||||| | ||||| ||||| || ||||||||||| || ||||| ||| || Sbjct 755390 CACTAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAATCTGACAATGTGCGTCCATCTTC 755449 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| ||||| |||| | | |||||| || || || ||||| || |||||| Sbjct 755450 AAGCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCTTG 755509 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||||| | ||| | ||||| | ||| ||||| | || | || || Sbjct 755510 GATTTTAGCCTTAACATTTTCAATTGTGTCAGATGGCTCAACCTCTAATGTGATAGTCTT 755569 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||| || || || || |||||||| Sbjct 755570 GCCTGTCAAGGTCTTAACGAAGATCTGCAT 755599 >seq3450 Length=502752 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 46993 CCGCAGGCGATGCGACCGCCCGAGTTGCCGGTGGTCTTGCTCAATGGATGACCGCCGAGA 47052 |||||||||||||| |||||| |||||||||||||||||| | || ||||||| Sbjct 191680 CCGCAGGCGATGCGCGCGCCCGCGTTGCCGGTGGTCTTGCTGAGCTCGTGGCCGCCGATG 191739 Query 47053 CCCAAGTCGTCGCGGTCCGAGTGAATGACCAGACTGCGTCCGATGACGCTGT 47104 || | ||||||| |||||| ||| | ||||| |||| ||||| | ||||| Sbjct 191740 CCGAGGTCGTCGGGGTCCGCGTGCACCACCAGCGTGCGCCCGATTATGCTGT 191791 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 47170 GCTTCAATGTTACCCAGATCGCCTACGTGACGCTCGGCGGCGTTGGGAGCGCCGTGAT-- 47227 || || ||||| || |||||||| || || ||| ||| |||| |||| |||||||| | Sbjct 192352 GCCTCGATGTTGCCGAGATCGCCGACATGGCGCACGGTGGCGGTGGGCGCGCCGTGCTCC 192411 Query 47228 TGCGGCCCAACGGATTATAGTGTTCGCCGGCCGACGTGCAGCCGTTGCTCGTGTCGCCGA 47287 ||| ||| || || ||||| ||||||| |||||||||||||| | |||| || | Sbjct 192412 TGCTTCCCT--GGGTTGAAGTGTGCGCCGGCGGACGTGCAGCCGTTTGTGTTGTCACCAA 192469 Query 47288 ATTCGTGCACGTGAAATCCGTG 47309 | || ||||| || || || || Sbjct 192470 ACTCATGCACATGGAAACCATG 192491 >seq802 Length=1346568 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 118616 CTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGT 118675 |||||| || ||||| || ||||| |||||| ||||||| ||| || | ||| | ||| Sbjct 833169 CTGCTGGTCTGGAGGGATTCCCTCTTTGTCTTGAATTTTTGCTTTGACATTTTCAATGGT 833228 Query 118676 GTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTG 118735 |||| | || ||||||| ||| | ||||| || || || ||||| || |||||||| Sbjct 833229 ATCCGAGGGTTCAACCTCGAGGGTGATGGTTTTCCCCGTGAGGGTTTTCACGAAAATCTG 833288 Query 118736 CAT 118738 ||| Sbjct 833289 CAT 833291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433809916968808