Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq3650 188 6e-43 seq593 116 3e-21 seq1964 93.3 3e-14 >seq3650 Length=1334389 Score = 188 bits (208), Expect = 6e-43 Identities = 631/971 (65%), Gaps = 27/971 (3%) Strand=Plus/Plus Query 6377 CTGTAGTCCACCACACCCTCCTCCCAAGTGCCTTTCACTTTACCCGTCGCCACCCCACTA 6436 || ||||| || ||||| || | |||||| ||||| ||| || ||||| ||| | Sbjct 960555 CTATAGTCAACTACACCGTCTTGCCAAGTACCTTTGACTGGTCCAGTCGCGTTGCCAGTG 960614 Query 6437 AACAGATTGTTGTTCGTGTAATTCGTCACACCCGACCACCCCCTGCCGTACATAGCCACC 6496 || ||||||||| |||||| ||||| | ||| || | ||||||||||| || Sbjct 960615 AATGGATTGTTGTCTTCGTAATTATGAACACCAGTCCAGCCGCGTCCGTACATAGCTACG 960674 Query 6497 CCCACCACCAACTTGCCACTGTTCACACTCTGGTTCAA-CAAACGCCTCAACGCAAAGTC 6555 |||||||| | ||| | |||||| | || | ||| |||| ||| ||||||| Sbjct 960675 CCCACCACAATCTTCTTAGGGTTCACGC-CTTGAGCAAGCAAATATTTCACACCAAAGTC 960733 Query 6556 TGTGGTGTAGTTTTCGTGGGTTTTCCACGACGGTGGATACAGAGGTGCGTGGTAGCCCAG 6615 ||||| || |||| | | ||||| | |||| || || || | || | || || Sbjct 960734 AGTGGTATAAGTTTCCTTAGGGTTCCAAGCGGGTGCGTAAAGTGGAGTCTGATGACCGAG 960793 Query 6616 ATCCGTCATC-GACCACGCACCCTTGTAATCGTAGTTCATCACGAAAATGTAGTCGAGAT 6674 ||| | ||||| || || || |||| || |||| | ||| || | ||| | || Sbjct 960794 GGT-GTCGTTAGACCAGGCGCCTTTAAAATCATAACTCATAAGGAAGATATGGTCCATAT 960852 Query 6675 ACTGTTGGCACTGTTTGTAGTCGACCACGTCTATCTTGTCGTAACCACCGCTGATGGCGC 6734 ||| ||| | |||| ||||| || | ||||| || | ||| | ||||| ||| Sbjct 960853 ACTTTTGAGCTTCACTGTAATCGACAACTTGGATCTTATCCCATCCAGCACTGATAGCGG 960912 Query 6735 TCGTCAACTGCAATCTCCGGCCCGTCTTCTCCTCCAGCTCGTCCAACATTTGTCTCAAAT 6794 |||| || || || || |||| || || |||| |||||||| | ||| | Sbjct 960913 AGGTCAGCTCGTATTTCTTACCGGTCTCTTCAGAAAGGTCGTTCAACATTTCACGCAATT 960972 Query 6795 CGCTCAGCAGCTGTACATAGGTGTACTTGTCGGTGT--CAGCATCGCCCAACTTGTCGTT 6852 | ||| | | || || || | || || | | | | || | | | ||| Sbjct 960973 CCTTCATTAATTCAACGTAA----ACATCTCCGTCTTTCGGGCTA-CCGAGGTCGGGGTT 961027 Query 6853 CGCTCCCTTTCCTCCCGGAAACTCCCAGTCAATATCCACTCCGTCGAAAAACTTCCACGT 6912 |||||||| ||||| || || ||||| || || || || || ||||| |||||||| || Sbjct 961028 AGCTCCCTTACCTCCAGGGAATTCCCAATCGATGTCAACACCATCGAAGAACTTCCAGGT 961087 Query 6913 CTCCAGAAACTCGCGCACGCTCTGCACAAACACC----CGA---CGCTTGGCGGAGTCGT 6965 | || || || | | || || || | ||| | ||| | |||| Sbjct 961088 CAAGAGGAAATCT-------TTTACAGAATCAACGAAGCGATCTCTCTTCTCCTTGTCGG 961140 Query 6966 GCATCTTGTAGAAGGGGTCGCTAAGCGTCCACCCGCCTATGGAGGGTAGTATAGTCAGAT 7025 | | ||||||| ||| || ||||| || || ||||| ||||| || | || | Sbjct 961141 TGAAGAAGAAGAAGGGATCGGCTAGTGTCCAACCACCGATGGAAGGTAGGATCTTAAGTT 961200 Query 7026 TGGGGTTGTGGTGTTTGATGGCCATCAGCTGGCCAAAATTACCCTTATACGGCTCGTCGT 7085 || || ||||||| | ||||||||||||||| || || || || || |||| Sbjct 961201 CAGGCCTGGCTTGTTTGAGAGACATCAGCTGGCCAAAGTTGCCTTTGTAAGGTTCGTTCC 961260 Query 7086 ACGCCTCCACACCCTTTTGTGGTTTCTGTACGGCGCCCCACAAATCGTGTATACTCACTT 7145 | | || ||||| ||||||||||| | ||| |||| |||||| ||| |||| Sbjct 961261 AGGAAGACAATCCCTTCTGTGGTTTCTGAAGAGCGGCCCAAGGATCGTGAATAGATACTT 961320 Query 7146 TGAAATCGTCTCGGCCCGCGCACGATCTTTGCAACGCTT-CAAACGACCCCGGCACCTGT 7204 ||||||| |||||||| ||||||||| || | |||| |||| || | | || | Sbjct 961321 TGAAATCTTCTCGGCCGCTGCACGATCTCTGAAGAGCTTGGAAACTGCCTTCG-ATCTCT 961379 Query 7205 TTCAAGGCGTCGTTGAGTCCGTCTCCCCCGCAAATGGGCACAAATCCGTACAGCAAATGG 7264 || ||| |||||||| || ||||| |||||||| || | || ||||| || ||||| Sbjct 961380 TTTAAGCTGTCGTTGATGCCATCTCCACCGCAAATTGGAATGAAGCCGTATAGTAAATGA 961439 Query 7265 CTGAGATTGGGCACGGGCACCTTGTCTGCGGGAAACTGCCGTCCGTACACACCCCACTCC 7324 | || || || | || || || | || || | | |||||||||||| || Sbjct 961440 GTCAGGTTAGGAATTGGAACACGATCGACTGGGAATTTTCTCGGGTACACACCCCATTCT 961499 Query 7325 ACAAAGTACGC 7335 || ||||| || Sbjct 961500 ACGAAGTATGC 961510 >seq593 Length=2014934 Score = 116 bits (128), Expect = 3e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 ||| || ||||| ||| ||||| || ||||| |||||| || | ||| | || || Sbjct 755618 TACTAAATGCAGGGTGGATTCCTTTTGGATGTTATAGTCGGACAATGTGCGTCCATCTTC 755677 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || ||||| |||||||| || | ||||| ||||| || || | ||||||||||| Sbjct 755678 CAACTGTTTACCGGCGAAGATGAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTG 755737 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || ||| |||||| | | | |||| | ||||||||||| ||| || ||||| Sbjct 755738 GATCTTTGCCTTAACATTCTCAATTGTGTCTGAAGGCTCCACCTCCAAGGTGATGGTCTT 755797 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||| |||| ||||||||||| || ||||| ||| Sbjct 755798 GCCTGTCAATGTCTTCACAAAAATCTGCATCTTG 755831 >seq1964 Length=1360 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || ||||||||| |||||||||||| ||| ||| | || ||| Sbjct 256 ACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTACGACCATCCTCC 197 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || || ||||| || || | || || ||||| ||||| | ||| |||||||| Sbjct 196 AACTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGG 137 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || |||||| | | | | ||||| || || || | ||| || || ||| Sbjct 136 ATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGTTCAACTTCTAGGGTGATTGTTTTG 77 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||||||||| || ||||| ||||| Sbjct 76 CCAGTCAGAGTCTTGACGAAGATCTGCAT 48 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395056546771354