Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq348 100 3e-16 >seq348 Length=4065129 Score = 100 bits (110), Expect = 3e-16 Identities = 160/224 (71%), Gaps = 8/224 (4%) Strand=Plus/Minus Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533 || || ||||| || || || |||||| |||||||||| || |||||||| || || Sbjct 3297238 ATATAAGTATCTATCAGCAATGAATACATCTCAGAGTGTACATTCTCCATAGCAATTTGG 3297179 Query 14534 AAACCATAAAAACATCTAGCTTCTGACCA--TTGTACCTCTGAGTAAAATCTTTCGGCCA 14591 || || ||||| | || ||||| |||| ||| || ||| |||||| || ||| Sbjct 3297178 AATCCGTAAAAGAACCTTGCTTC--ACCAATTTGAACTTCTTGTGAAAATCGCTCTACCA 3297121 Query 14592 AATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGT 14651 |||||||||||| |||||||| || |||||||| ||||| | | ||| ||||| Sbjct 3297120 GATTTTCATTAACAATACCATCGGAGGCAGCAAAAAACGCCAAGACATGTTTTATAAA-- 3297063 Query 14652 ATTGCTCT-TCATTGC-TGAGTTTTTTCCAATCGGCTAAATCCT 14693 || |||| || | | | | ||| |||||| | |||||||| Sbjct 3297062 ATGCCTCTCACAGTCCTTTAAACTTTCCCAATCTGATAAATCCT 3297019 Score = 100 bits (110), Expect = 3e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 ||||||| ||| ||| ||||| || || || || || |||||||| || || || | Sbjct 3297633 CCTCATCCCTAGAAATCAGTTCATTGCTGAAGGTCAAACCGGGCATCAAGCCACGCTTCT 3297574 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | ||||| ||||||| || || |||||||||||| || || || || || ||||| | Sbjct 3297573 TCAACCAGAATATTGATGCAAAACTTCCGGAAAAGAAGATGCCTTCTACAGCCGCAAATG 3297514 Query 14346 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14405 | | || | |||||||| |||| | ||| | | ||||||| | ||||| || | Sbjct 3297513 CAACTATCCTCTCTCCAAAGTTTGCTGTCTTGCTGGCGATCCATTGTAATGCCCAGTCTG 3297454 Query 14406 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14448 |||||||| | | || | || ||||| ||||| || || Sbjct 3297453 CCTTTTTTTTCACACAAGGTAAAGTCTCAATGGCATTGAACAA 3297411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482322242414320