Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq3650 228 6e-55 seq2316 120 2e-22 seq593 93.3 3e-14 >seq3650 Length=1334389 Score = 228 bits (252), Expect = 6e-55 Identities = 642/971 (66%), Gaps = 31/971 (3%) Strand=Plus/Plus Query 90990 ATAGTCAACGACTCCATCTTCCCACGTGCCCGTAACCGGACCGTTAGCGACACCATCAAA 91049 ||||||||| || || |||| ||| || || | || || || | ||| ||| || Sbjct 960557 ATAGTCAACTACACCGTCTTGCCAAGTACCTTTGACTGGTCCAGTCGCGTTGCCAGTGAA 960616 Query 91050 ---ATAGTTATCACCTTTGTAATCAGACACGCCTGTCCAGCCGCGCCCGTACATGGCGAC 91106 || ||| || || ||||| | || || ||||||||||| |||||||| || || Sbjct 960617 TGGATTGTTGTC---TTCGTAATTATGAACACCAGTCCAGCCGCGTCCGTACATAGCTAC 960673 Query 91107 ACCAATAATTATTTTACTAGAATCAACACCTTGTTTTGTGAGCAT---TTGCACGGCATG 91163 || | | || || ||| | || ||||| | |||| || ||| || Sbjct 960674 GCCCACCACAATCTTCTTAGGGTTCACGCCTTGA---GCAAGCAAATATTTCACACCAAA 960730 Query 91164 ATGCGTGGTGTACAACTCGTTCGGGTTCCATTGCGGG-GCGTATAGTGTCGTTTGATAGC 91222 | ||||| || || || |||||||| ||||| ||||| |||| || |||| | Sbjct 960731 GTCAGTGGTATAAGTTTCCTTAGGGTTCCAA-GCGGGTGCGTAAAGTGGAGTCTGATGAC 960789 Query 91223 CCAAATCGGTATTTGACCAAGCTCCTTTAAAATCGTAAGTCATGACATATATTTTACTCA 91282 | | | || ||||| || ||||||||||| ||| |||| | | || | || Sbjct 960790 CGAGGGTGTCGTTAGACCAGGCGCCTTTAAAATCATAACTCATAAGGAAGATATGGTCCA 960849 Query 91283 AAAACTTTTGTGCAGCGTCA---TAATCGACAAGTTCGATCTTGTCATAACCGGCACCGA 91339 | ||||||| ||| ||| |||||||||| || |||||| || | || |||| || Sbjct 960850 TATACTTTTG---AGCTTCACTGTAATCGACAACTTGGATCTTATCCCATCCAGCACTGA 960906 Query 91340 TTGCGCTTGTCAATTCGTACACTTTACCTGTTTGTGCTTGCAAATCATCCAACATGTCAC 91399 | ||| |||| ||||| ||||| || | | | | || | |||||| |||| Sbjct 960907 TAGCGGAGGTCAGCTCGTATTTCTTACCGGTCTCTTCAGAAAGGTCGTTCAACATTTCAC 960966 Query 91400 GCAACTCTTTTAGCAAAACAATGTATGTAGCAGCGTCGCGTTTCGGATCGCCAATGGCCG 91459 |||| || || | || ||| ||| | | |||| |||||| || | | | | Sbjct 960967 GCAATTCCTTCATTAATTCAACGTAAACATCTCCGTC---TTTCGGGCTACCGAGGTCGG 961023 Query 91460 GATTAGCGCCTTTACCGCCCGGAAATTCCCAATCAATATCTACACCGTCAAAAAATTTCC 91519 | ||||| || ||||| || || ||||||||||| || || ||||| || || || |||| Sbjct 961024 GGTTAGCTCCCTTACCTCCAGGGAATTCCCAATCGATGTCAACACCATCGAAGAACTTCC 961083 Query 91520 AAACTTGCAAAAATTCTTTAACCGAATCAACGAAC--ACGTTTCTTCGT-TTGACATCGT 91576 | | || ||||| || ||||||||||| | | ||||| ||| | || Sbjct 961084 AGGTCAAGAGGAAATCTTTTACAGAATCAACGAAGCGATCTCTCTTCTCCTTGTCG--GT 961141 Query 91577 GCATAAAATAGAACGGGTCCGACAAAGTCCAGCCACCGATGGACGGTAAAACTTTTAAAT 91636 | | || | |||| || || | | ||||| ||||||||||| |||| | | |||| | Sbjct 961142 GAAGAAGA-AGAAGGGATCGGCTAGTGTCCAACCACCGATGGAAGGTAGGA-TCTTAAGT 961199 Query 91637 GCGGGT-TGGCCAACTTGGCGGCCATTATCTGACCAAAGTTGCCCTTGTAAGGCTCGTTC 91695 | || |||| ||| | ||| | ||| ||||||||||| |||||||| |||||| Sbjct 961200 TCAGGCCTGGCTTGTTTGAGAGACATCAGCTGGCCAAAGTTGCCTTTGTAAGGTTCGTTC 961259 Query 91696 CAAGCGGATACACCTTTTTGTGGTTTTTGTATGGCTGCCCACGGATCGTGTATGGAAACT 91755 || | || | || || |||||||| || | || ||||| |||||||| || || ||| Sbjct 961260 CAGGAAGACAATCCCTTCTGTGGTTTCTGAAGAGCGGCCCAAGGATCGTGAATAGATACT 961319 Query 91756 TTAAAATCATCGCGTCCTTTGCACGATCGTTGCAAATTTTCAAAACTACCAGGTATTGTT 91815 || ||||| || || || ||||||||| || | | || ||||| || || | Sbjct 961320 TTGAAATCTTCTCGGCCGCTGCACGATCTCTGAAGAGCTTGGAAACTGCCTTCGATCTCT 961379 Query 91816 TTGAGGGCATCGTTTAATCCATCGCCTCCGCAAATGGGTATAAAACCGTACAACAGATGG 91875 || | | ||||| | ||||| || |||||||| || || || ||||| | | ||| Sbjct 961380 TTTAAGCTGTCGTTGATGCCATCTCCACCGCAAATTGGAATGAAGCCGTATAGTAAATGA 961439 Query 91876 GACAAATTTGGCAGCGGCACCTTGTCGATTGGAAAGTTGCGTCCGTACACGCCCCATTCA 91935 | || || || | || || |||| ||| || || | |||||| |||||||| Sbjct 961440 GTCAGGTTAGGAATTGGAACACGATCGACTGGGAATTTTCTCGGGTACACACCCCATTCT 961499 Query 91936 ACAAAGTACGC 91946 || ||||| || Sbjct 961500 ACGAAGTATGC 961510 >seq2316 Length=6356476 Score = 120 bits (132), Expect = 2e-22 Identities = 175/245 (71%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || || | |||| ||||||||||||||| || || ||||||||||||| | Sbjct 2659571 CCTCCTCGCAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGAC 2659512 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | |||||| || |||||||| || |||| | ||||| ||||| ||| Sbjct 2659511 AATGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAACCTTTGCTGATCTGGGGGA 2659452 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||| || || || ||||| | || || || | | ||| ||||||| || || Sbjct 2659451 ATGCCCTCTTTGTCTTGAATTT-TCGCTTTTACATTTTCAATAGTGTCAGAGGCTTCAAC 2659393 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAACTCTT 18337 || | || ||| |||| || || | |||||||| || || |||||| || |||| | Sbjct 2659392 CTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCATTGTTGAACTGTA 2659333 Query 18338 ATAAA 18342 ||||| Sbjct 2659332 ATAAA 2659328 >seq593 Length=2014934 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||||| ||||||||||||||| ||||| ||||||||||| | | || | ||| Sbjct 754932 AGTACCAAGTGAAGTGTTGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGGCCATCC 754991 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | |||||||| ||| |||| | ||| || || || ||| | ||||| ||||| Sbjct 754992 TCTAGCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGGATACCTTCTTTATCC 755051 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | | || ||||| | ||| || ||| || || || | ||||||| | Sbjct 755052 TGGATCT-TGGCTTTGACATTCTCAATGGTATCAGAAGGTTCAACCTCCAAGGTGATGGT 755110 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||| || || || ||||||||||| Sbjct 755111 CTTGCCTGTCAAAGTCTTCACGAAAATTTGCAT 755143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379326089510130