Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq3650 275 5e-69 seq3450 86.0 5e-12 >seq3650 Length=1334389 Score = 275 bits (304), Expect = 5e-69 Identities = 727/1095 (66%), Gaps = 25/1095 (2%) Strand=Plus/Plus Query 35690 TCGCCGTTGTCCGCATCGATTTCCCATGCGAATAATCCGCCGAGTCTACGCTGAAGCACG 35749 || || ||||| || ||||| ||||| |||||||| || || || || | || Sbjct 960354 TCACCATTGTCTGCGTCGATCTCCCACGCGAATAAACCACCAAGCTTATTTTTTCTAACA 960413 Query 35750 TATTCGCCTTTGGCCAGTACCGATCTTTCGCTGTCATACGATATTAAGTCGCCAGAGGCG 35809 || | |||||| | | ||||| | | | ||||||| ||||||||| |||| | Sbjct 960414 TACTTGCCTTTCTCAATAGTCGATCGTGCATTATCATACGTTATTAAGTCACCAGTCGAT 960473 Query 35810 CGGTCGAATACGTACGCAGCCTTGGCCACGTCGTCG-AATGCGTATTCGTA---ACGCGA 35865 | ||| ||||| | ||||| || || | ||| |||| | |||| | || | | Sbjct 960474 GGCCTGAACACGTAAGGAGCCTCAGCAACATTATCGTAATG-GAATTCCCATTTACCCAA 960532 Query 35866 A---ATGTTTTTAGCAATCTGTCTGTAGTCGACCACGCCGTTTTCCCATGTACCCGTGAT 35922 | || | | || || ||| ||||| || || |||| || ||| ||||| ||| Sbjct 960533 AGCAATCTCATGTGCTATTGCTCTATAGTCAACTACACCGTCTTGCCAAGTACCTTTGAC 960592 Query 35923 CGGTCCGACGGCTACGCCACTGAATGGATTGTCACTGTTGTAGTTGTGGACGCCCGTCCA 35982 ||||| || |||| |||||||||||| | ||| || || || || ||||| Sbjct 960593 TGGTCCAGTCGCGTTGCCAGTGAATGGATTGTTGTCTTCGTAATTATGAACACCAGTCCA 960652 Query 35983 ACCGCGGCCGTACATTGCTACGCCCAACACGAGtttttttGGATTCACTCGTTGCGCGAG 36042 ||||| |||||||| |||||||||| ||| | || || || ||||| | ||| || || Sbjct 960653 GCCGCGTCCGTACATAGCTACGCCCACCACAATCTTCTTAGGGTTCACGCCTTGAGCAAG 960712 Query 36043 CAAAGCGTCCACGGCCACGTTGGCGGTGTACGGTTCGTTAGGTTTCCACGCGGAACCGTA 36102 |||| | ||| | | || | ||| || | ||| ||||| ||||| |||| |||| Sbjct 960713 CAAATATTTCACACCAAAGTCAGTGGTATAAGTTTCCTTAGGGTTCCAAGCGGGTGCGTA 960772 Query 36103 CAGTGCCGTCTGATGACCGAGATCGGTATTAGACCAAGCTCCTTTGAAATCATAACTCAT 36162 |||| |||||||||||||| | |||||||| || ||||| |||||||||||||| Sbjct 960773 AAGTGGAGTCTGATGACCGAGGGTGTCGTTAGACCAGGCGCCTTTAAAATCATAACTCAT 960832 Query 36163 CACGAAAATTTTATCTAAATACTGTTGTGCTCGGTCGTAATTAACCGCGGCGATCTTGTC 36222 | ||| || | || | ||||| ||| ||| ||||| || | |||||| || Sbjct 960833 AAGGAAGATATGGTCCATATACTTTTGAGCTTCACTGTAATCGACAACTTGGATCTTATC 960892 Query 36223 TATGCCAGCGCTAATCGCTGTGGTGAGTTCTAAAGTACGATTCGTTTGTATTTGAA--CT 36280 ||||| || || || | ||| || || | | | || | | | ||| | Sbjct 960893 CCATCCAGCACTGATAGCGGAGGTCAGCTCGTATTTCTTACCGGTCTCT-TCAGAAAGGT 960951 Query 36281 TGATCGAGCATGGCGCGCAATTCGCCCAATAAAGCGA--TATACGTGTTATTGTCGCGTT 36338 | || | ||| | |||||||| || ||| | | || || | | | | || Sbjct 960952 CGTTC-AACATTTCACGCAATTCCTTCATTAATTCAACGTAAACATCTCCGTCTTTCGGG 961010 Query 36339 CCACATCGCCAACGTTTGGATTGGCGCCTTTGCCGCCCGGAAATTCCCAATCAATATCGA 36398 | | || | || || || || || || || || || ||||||||||| || || | Sbjct 961011 CTA-----CCGAGGTCGGGGTTAGCTCCCTTACCTCCAGGGAATTCCCAATCGATGTCAA 961065 Query 36399 TGCCGTCGAAAAATTTCCATGTCAACACAAATTCACGCACGGATTCGACAAAAATTTGTC 36458 || ||||| || ||||| ||||| | || || || || || || || | || Sbjct 961066 CACCATCGAAGAACTTCCAGGTCAAGAGGAAATCTTTTACAGAATCAACGAAGCGATCTC 961125 Query 36459 GCGTTCGCGCATC-GTGCATATGATAGAAGGGATCGGACAGTGTCCAACCGCCGATTGAT 36517 | | | || ||| | | || |||||||||||| ||||||||||| ||||| || Sbjct 961126 TCTTCTCCTTGTCGGTGAAGAAGA-AGAAGGGATCGGCTAGTGTCCAACCACCGATGGAA 961184 Query 36518 GCCAACACTTTTAGATTGGGATTGGCCAATTTTGCTGCCATTAATTGACCAAAATTGCCT 36577 | | | || || | || |||| ||| | ||| | || ||||| |||||| Sbjct 961185 GGTAGGATCTTAAGTTCAGGCCTGGCTTGTTTGAGAGACATCAGCTGGCCAAAGTTGCCT 961244 Query 36578 TTGTAGGGTTCGTTCCATG-CGCTAACGCCTGTTTGTGGTTTTTGGAGCGCCGCCCACGG 36636 ||||| ||||||||||| | | || ||| | |||||||| || || || ||||| || Sbjct 961245 TTGTAAGGTTCGTTCCAGGAAGACAATCCCT-TCTGTGGTTTCTGAAGAGCGGCCCAAGG 961303 Query 36637 ATCGTGTATGGAAACTTTAAAATTGTCCCTGCCAGCGCACGATCTTTGCAACGCTTCAAA 36696 |||||| || || ||||| |||| || | ||| ||||||||| || | |||| || Sbjct 961304 ATCGTGAATAGATACTTTGAAATCTTCTCGGCCGCTGCACGATCTCTGAAGAGCTTGGAA 961363 Query 36697 ACTCCCCGTGATAGATTTTAAACTGTCGTTTATACCGTCACCGCCGCAAATCGGTATAAA 36756 ||| || ||| |||||| |||||||| || || || || |||||||| || || || Sbjct 961364 ACTGCCTTCGATCTCTTTTAAGCTGTCGTTGATGCCATCTCCACCGCAAATTGGAATGAA 961423 Query 36757 TCCGTATA--AAATG 36769 ||||||| ||||| Sbjct 961424 GCCGTATAGTAAATG 961438 >seq3450 Length=502752 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 100604 CACGGTATACACGTTCACGAGTTCGGCGACACCAGCAACGGATGTACGTCCGCCGGGGAA 100663 || ||| | || || || ||||| || |||| || ||||| || ||||||||||| | | Sbjct 192491 CATGGTTTCCATGTGCATGAGTTTGGTGACAACACAAACGGCTGCACGTCCGCCGGCGCA 192432 Query 100664 CATTTCAATCCTACGGGCCAAACGCACGGGGCGCCAAACGCGACCGTGCGTCACGTCGGC 100723 || ||||| || | || |||||| ||||| | ||| |||||||| || |||||| Sbjct 192431 CACTTCAACCCAGGGAAGCAGGAGCACGGCGCGCCCACCGCCACCGTGCGCCATGTCGGC 192372 Query 100724 GACTTGGGCAACGTCGA 100740 || | |||||| |||| Sbjct 192371 GATCTCGGCAACATCGA 192355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418284250038080