Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2316 515 5e-141 seq2205 129 7e-25 seq348 116 5e-21 >seq2316 Length=6356476 Score = 515 bits (570), Expect = 5e-141 Identities = 1194/1786 (67%), Gaps = 28/1786 (2%) Strand=Plus/Plus Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096 ||||| | ||||| ||||| | | | || || || |||||| ||| |||||||| Sbjct 2965197 TTGTCAACCGTGAACTGAATAGCATTAGCAGCAGGCTTTATACGTAAATAATACATTCCT 2965256 Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156 ||||| | ||| | ||||| ||||||| || || || | ||| |||| |||| Sbjct 2965257 GTTTTCAAACCCATTTTCCATGCGTAAAAGTGAATTGATGTCAATTTTCCATAATTCGGT 2965316 Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216 || || | ||| || || | |||||||||||| || || || || || | || |||||| Sbjct 2965317 TCAGCCACATGAATGTTAAAAGATTGACTTTGGTCTATAAATGCACCTCGATCAGCAGCC 2965376 Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 62275 ||||| || | || || | ||| ||||||| |||||||| || || || ||| || Sbjct 2965377 ATTTTAATTGTAGTTTTAACAGAAATCTCCCAAACTGTTTTATACAATTCTCT-AATGTC 2965435 Query 62276 TTCTGGAAG--GTTTG-TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGAT 62332 | ||| | | | | |||| |||||||| ||| | || ||| ||| || || Sbjct 2965436 CTTTGGTATACGCTCGATATTTTGAATGGAACCATTGTTGTGAATTATCAGATTTTTCAT 2965495 Query 62333 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTG 62392 || || | |||||| | | || || || ||| | | ||| ||||||| || || Sbjct 2965496 GTCGTCGTCCCATAAATCTGCCTGCGTCAAGTCTCGCAACAAATGATGGTTAACAACCTG 2965555 Query 62393 GAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTC 62452 |||||| |||||||| || | | |||||| || ||| | ||||| | || || Sbjct 2965556 GAATTCCCCAGACAAAACACGTCTTTGGTAAATGTTTGATGTAAATGGTTCAAAGGATTC 2965615 Query 62453 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATT 62512 ||| |||||||| ||||| || || || || || ||||| || || | || | ||| Sbjct 2965616 ATTGTTTCCCAAGATTTGGGCTGTAGACGCTGTAGGCATTGGAGCTAATAAAAGCGAATT 2965675 Query 62513 TCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGAC 62570 | || || ||||| | ||||| ||||||| | ||| | ||| ||||| || Sbjct 2965676 GCGCAGCCC--ATGTTTGGCAATTTTTTCTTTTAAAACAGACCAGTCCCAGAGATCAGAT 2965733 Query 62571 GGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTACATA 62629 || | |||||| | ||| || | || || | || |||| |||| Sbjct 2965734 GGAGTTTTATCCCACATGTCATATTGCAAAATGCCTTGGCTTGCTGGACT-TCCTTCATA 2965792 Query 62630 TGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATA 62689 |||| ||| |||||| | | || |||| ||||| || |||||||| |||||||| Sbjct 2965793 TGTACTATAAACTCCTTCTCTTTGCGCCAGTTCGCAACTGGCTTCTAATGCTCCGTAATA 2965852 Query 62690 AATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATT 62749 || ||||| ||||| | | || || | ||| | || ||| | ||| Sbjct 2965853 TATCGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCCTTGTCACTTTCATAAGGAATGCG 2965912 Query 62750 TAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 62809 | |||| ||| | || ||||| ||||| || ||||| || || ||||| || | | | Sbjct 2965913 CATCAGAACAAATGTATCAGCTAACCCTTGCACTCCAATCCCAATTGGTCTGTGGCGCAT 2965972 Query 62810 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62869 || || | | |||||||| | || ||| |||||| ||| ||||||||||| || || Sbjct 2965973 GTTGGAATTCTTTGCTTCTGGCACTGGGTAAAAATTAACATCAATAATTTTATTAAGGTT 2966032 Query 62870 TCTGACAATTA-CTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCT--AT 62926 | |||| ||||| || || ||| || ||| | || |||| || Sbjct 2966033 TTGTGTGATTATCTTTGTG-ACTTCTCTCAACTTTGTAAAGTTGTATGTTTTATCTTCAT 2966091 Query 62927 TA-CAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCG 62985 || ||||| ||||||| |||| ||| || | |||||| || || || |||| || | Sbjct 2966092 TAACAAACCTGTTCAAAGCAATAGAAGCTAAATTACAAACAGCAACTTCATCTGCTGAAG 2966151 Query 62986 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGAT 63045 |||| | || || ||||| | |||||| || || || || || | ||||| ||||| Sbjct 2966152 TGTATTCAACAATTTCTGTGCACAAATTACTGCATTTAATGGTGCCAAGATTTTTTTGAT 2966211 Query 63046 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 63105 | || ||| ||||||| | ||| ||||| | || |||| || || ||||| | || | Sbjct 2966212 TGCTTTTTCTGTTACAAGAATCTTTATATAACATATATGGTGTGCCTGTTTCCACTTGTG 2966271 Query 63106 ATTCTATAATCGCTTTCCAGACGACTCGAGC-----CTTTATTATAGATTTGTATCTCCT 63160 |||||| || |||||||| | || |||| ||| ||| | ||||| | Sbjct 2966272 CTTCTATGATTGCTTTCCACAGTTCTTGAGCTCGGACTTGCTTAACAA-----ATCTCTT 2966326 Query 63161 TTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCT 63220 ||| ||| ||| | ||| ||| ||| || || ||||||||| | | | | | Sbjct 2966327 TTCCTCTTCATATTGCCCATATAATGCTTCAAATTCTTCTCCCCAACAGTCGGCAAGACC 2966386 Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280 || || |||| || ||||| || |||| | | || | | || || |||||||| Sbjct 2966387 GGGGCAATCATGAGGGCACATTAAACTCCACATTTCATCTTTTTCAACACGCTTCATAAA 2966446 Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 | ||| || ||||| | || |||||| ||||| | ||| ||| || || || || Sbjct 2966447 CAAATCTGGGATCCATAATGCATAAAATAGTTCTCTGGCTCTGACTTCTTCTTTGCCAGT 2966506 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 ||||||||| ||||| | ||| | | | |||||| ||||| ||||| ||||| || || Sbjct 2966507 ATTCTTTTTCAGATCTAAAAACTCAAACACATCAGAGTGCCAGGGTTCTAAGTAAATAGC 2966566 Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460 | | || || |||||||| ||||| || || | || || || || ||||| || || Sbjct 2966567 AAATGCACCTGGTCGTTTGTTGCCTCCTTGGTCAACATACCTTGCTGTATTATTGTACAC 2966626 Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520 || ||||||||| | || ||| || |||| ||| || ||||| | ||||| || | Sbjct 2966627 TCGCAACATTGGTACAAGACCATTGGATACACCGTTAGTACCTGCTATATAAGTACCTTT 2966686 Query 63521 GGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63580 || | |||| | || ||| || || || || || ||| ||||||||||| || Sbjct 2966687 TGCTCTAATACAATGAACATGTAGTCCAATGCCACCAGCTGATTTTGAGATTAATGCACA 2966746 Query 63581 TCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCAT-GTTAAGTAGAAAAC 63639 | |||||| |||||||| || ||||| ||||| ||||| |||| | || | || || | Sbjct 2966747 TTGTTTTAGTGTGTCATATATACCTTCAATGCTGTCATCTTTCATAGCTATG-AGGAAGC 2966805 Query 63640 AGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63699 | ||||| ||| | | | |||| | ||| ||||| || ||| || || |||| Sbjct 2966806 AAGAAGACAATTGTGGTCTCGGAGTTGCTGCAGAGAATAATGTGGGACTGGCATGTGTAA 2966865 Query 63700 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAA 63759 | |||||||||| | || ||||| || ||||| ||||| || || || ||| | Sbjct 2966866 AGTATTTTTCAGACAATAAGTTGTAGGTTTCAATGGCTGAATCAATGTCTTCACCATGGA 2966925 Query 63760 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAAT 63805 |||| | || ||| ||||| | ||| ||||| ||||||||| |||| Sbjct 2966926 TTCCAATTGAGACCCGCATCAGCATATGCTGGGGTCTTTCAGCAAT 2966971 Score = 100 bits (110), Expect = 4e-16 Identities = 104/135 (77%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 64010 AAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGC 64069 |||| |||| || ||||| ||||||| ||| ||||| |||| ||| || ||||| | || Sbjct 2967855 AAAT-GTTTCTTGGTTTCTTTGTGTAAATTAGATATAGCTAATCTAGCAGCTAGTACAGC 2967913 Query 64070 ATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 64129 ||||| ||||| | ||| || |||||| || |||| || || | | |||||||||| Sbjct 2967914 GTAATCTGGATGATCTGTTGTCATAGTGGCAGCAGTTTCTGCAGCTAAATTGTCCAATTC 2967973 Query 64130 TACCGTTGTTACTCC 64144 || ||||||||||| Sbjct 2967974 CACAGTTGTTACTCC 2967988 >seq2205 Length=3731788 Score = 129 bits (142), Expect = 7e-25 Identities = 219/317 (69%), Gaps = 3/317 (1%) Strand=Plus/Minus Query 155252 TTATGACTCCAATTAATCCCATGTTAGCGGAATCATGTGATTCTGTCAATAAGGCGTTTA 155311 ||||||| || || || |||||||| ||| ||||| | ||| | | | ||| | | Sbjct 1151104 TTATGACACCTGTTTTGCCTATGTTAGCTGAAGCATGTAAATCTATAGAAATGGCTATGA 1151045 Query 155312 AAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGTTC 155371 | |||| |||| |||||||| ||||| | ||||| |||||||||||||| ||||||| Sbjct 1151044 AGAAATGTCCAAACGGAATGTTCTCGGAAATAAAATATGATGGTGAAAGAGTTCAAGTTC 1150985 Query 155372 ATaaaaaaaaTAACGAGTTTGCATTCTTTAGTAGAAACATGAAACCAGTACTCTCTCATA 155431 |||||||| | || ||| || ||| | || | || | ||| | | |||| Sbjct 1150984 ATAAAAAAGGTTCTGAATTTAAATATTTTTCTCGAGCTCTTAAGGCTGTAATGGCACATA 1150925 Query 155432 AAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGTAT 155491 |||| || || | |||||||| | ||||| |||||| |||| ||| | | ||| Sbjct 1150924 AAGTAAATCATTTAAAAGAATATTTGCCGAAGGCATTTCCTAAAGGTACCGATTTGGTAC 1150865 Query 155492 TGGATTCTGAAATTGTTCTTGTAGACGAACATAATG---TACCGCTACCGTTTGGAAGTT 155548 | ||| | |||||| | || || || | | | || ||| |||| ||||| | | Sbjct 1150864 TAGATGCAGAAATTTTACTGGTTGATGTGAAAACTGGGAAACCTTTACCATTTGGTACAT 1150805 Query 155549 TAGGTATACACAAAAAG 155565 |||||||||||||| || Sbjct 1150804 TAGGTATACACAAACAG 1150788 >seq348 Length=4065129 Score = 116 bits (128), Expect = 5e-21 Identities = 145/197 (74%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 33832 TTTCATTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAAT 33889 |||| ||| ||| | | ||||||||| |||| || || |||||| || || || | Sbjct 3297255 TTTCTTTAGGGTCTCTGATATAAGTATCTATCAGCAATGA--ATACATCTCAGAGTGTAC 3297198 Query 33890 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGT 33949 || || || || || || |||||||| || | || || || ||| || |||||| Sbjct 3297197 ATTCTCCATAGCAATTTGGAATCCGTAAAAGAACCTTGCTTCACCAATTTGAACTTCTTG 3297138 Query 33950 ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAA 34009 ||||||| ||| | | ||||||||| || || ||||| ||| |||||||||||||| Sbjct 3297137 TGAAAATCGCTCTACCAGATTTTCATTAACAATACCATCGGAGGCAGCAAAAAACGCCAA 3297078 Query 34010 TACATGTTTTATAAAAT 34026 |||||||||||||||| Sbjct 3297077 GACATGTTTTATAAAAT 3297061 Score = 109 bits (120), Expect = 7e-19 Identities = 158/222 (71%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| || ||| ||| | ||| || || || | |||||||| | ||||||||| | Sbjct 3297633 CCTCATCCCTAGAAATCAGTTCATTGCTGAAGGTCAAACCGGGCATCAAGCCACGCTTCT 3297574 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | ||| ||||| || || || ||||||||||||||| |||||||| || ||||| | Sbjct 3297573 TCAACCAGAATATTGATGCAAAACTTCCGGAAAAGAAGATGCCTTCTACAGCCGCAAATG 3297514 Query 33724 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATG-----TATCCACTTTTGAGCCCAATC 33778 ||| | |||||||| || |||||| || ||||| | | ||||| || Sbjct 3297513 CAACTATCCTCTCTCC--AAAGTTTGCTGTCTTGCTGGCGATCCATTGTAATGCCCAGTC 3297456 Query 33779 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33820 ||||| ||||| |||||||| | || || |||||||| || Sbjct 3297455 TGCCTTTTTTTTCACACAAGGTAAAGTCTCAATGGCATTGAA 3297414 Score = 100 bits (110), Expect = 4e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127 || |||| ||| ||||| ||||||||||| ||||| || ||||||||||| ||||| | | Sbjct 3296936 TTGGATAGATCAACTTCCTCCACTGTCCAGAATGAAGCTTCTGCCTTTTTGTACATTTGC 3296877 Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 ||||| ||| |||||||||| ||||| || || || Sbjct 3296876 CAGATATCAGGATATTGGATGGGGAAGATGACGAA 3296842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629787101082720