Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2316 619 1e-172 seq348 87.8 2e-12 >seq2316 Length=6356476 Score = 619 bits (686), Expect = 1e-172 Identities = 1222/1783 (69%), Gaps = 40/1783 (2%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| ||||| | |||| ||| | || | ||| | | | |||||||||||| ||| Sbjct 2965200 TCAACCGTGAACTGAATAGCATTAGCAGCAGGCTTTATACGTAAATAATACATTCCTGTT 2965259 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || | |||| | ||||| ||||||| || || |||| |||| | || | || | | Sbjct 2965260 TTCAAACCCATTTTCCATGCGTAAAAGTGAATTGATGTCAATTTTCCATAATTCGGTTCA 2965319 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | | || || | | ||||||||||| |||||||| ||||||| || || |||||| Sbjct 2965320 GCCACATGAATGTTAAAAGATTGACTTTGGTCTATAAATGCACCTCGATCAGCAGCCATT 2965379 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 | | || ||| ||| ||||||||||| |||||||| | || | | || | | | Sbjct 2965380 TTAATTGTAGTTTTAACAGAAATCTCCCAAACTGTTTTATACAATTCTCTAATGTCCTTT 2965439 Query 37030 GGTAAA---TCTAAATGTTGAATAGAACCATTAT-GTAACACAATTGTATTCTTTATGTC 37085 |||| | || | || |||||| |||||||| | || | | || ||| || ||||| Sbjct 2965440 GGTATACGCTCGATATTTTGAATGGAACCATTGTTGTGA-ATTATCAGATTTTTCATGTC 2965498 Query 37086 ATTATTCCACATATTT--CTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGA 37143 | | ||| | || | || | | ||| ||| ||| | || | || |||||||| Sbjct 2965499 GTCGTCCCATAAATCTGCCTGCGTCA-AGT-CTCGCAACAAATGATGGTTAACAACCTGG 2965556 Query 37144 AAATCTCCAGATAATACTCTTCTT--GTATATATATTGCTAGTATATGGTTCAATGGACT 37201 || || ||||| || || | |||| ||| || | ||| | ||| ||||||||| ||| | Sbjct 2965557 AATTCCCCAGACAAAACACGTCTTTGGTAAATGT-TTGAT-GTAAATGGTTCAAAGGATT 2965614 Query 37202 CATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTAT 37261 |||| || | || ||||| | |||||| || ||||||||||| |||| || ||| || Sbjct 2965615 CATTGTTTCCCAAGATTTGGGCTGTAGACGCTGTAGGCATTGGAGCTAATAAAAGCGAAT 2965674 Query 37262 TTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTG 37321 | | || |||||| | |||| | | ||||| || ||| ||||| | ||| | || Sbjct 2965675 TGCGCAGCCCATGTTTGGCAATTTTTTCTTTTAAAACAGACCAGTCCCAGAGATCAGATG 2965734 Query 37322 GGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATG 37381 | | || |||||| |||||||| | ||| |||| || |||||| | | ||||| Sbjct 2965735 GAGTTTTATCCCACATGTCATATTGCAAAATGCCTTGGCTTGCTGGACTTCCTTCATATG 2965794 Query 37382 TCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATA 37441 | |||| ||| | ||| || ||||||||||| | ||||| ||| | ||||||| Sbjct 2965795 TACTATAAACTCCTTCTCTTTGCGCCAGTTCGCAACTGGCTTCTAATGCTCCGTAATATA 2965854 Query 37442 TTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCA 37501 | |||||||| |||||| || | | | |||| | || || || | | | || || Sbjct 2965855 TCGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCCTTGTCACTTTCATAAGGAATGCGCA 2965914 Query 37502 ATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTAT 37561 | | ||| |||||| || || || || || || || || ||||| || | | | Sbjct 2965915 TCAGAACAAATGTATCAGCTAACCCTTGCACTCCAATCCCAATTGGTCTGTGGCGCATGT 2965974 Query 37562 TAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTT 37621 | || | | |||| |||||| ||| |||| | ||| || |||||||| || |||| Sbjct 2965975 TGGAATTCTTTGCTTCTGGCACTGGGTAAAAATTAACATCAATAATTTTATTAAGGTTTT 2966034 Query 37622 TAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTTA---TTATTAA 37678 | ||| || || | | ||||||||| || | || ||| | ||||| Sbjct 2966035 GTGTGATTATCTTTGTGACTTCTCTCAACTTTGTAAAGTTGTATGTTTTATCTTCATTAA 2966094 Query 37679 CAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAA 37738 |||| | |||| | |||||| ||| |||||| ||||||||||||||| | | | Sbjct 2966095 CAAACCTGTTCAAAGCAATAGAAGCTAAATTACAAACAGCAACTTCATCTGCTGAAGTGT 2966154 Query 37739 ATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGG 37798 ||| | ||| ||||| || | |||||| || |||| || || | ||| |||||||| Sbjct 2966155 ATTCAACAATTTCTGTGCACAAATTACTGCATTTAATGGTGCCAAGATTTTTTTGATTGC 2966214 Query 37799 ATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCT 37858 |||| | ||||||||||||||||||| ||||| || || ||| ||| | ||| || | Sbjct 2966215 TTTTTCTGTTACAAGAATCTTTATATAACATATATGGTGTGCCTGTTTCCACTTGTGCTT 2966274 Query 37859 CGATAATAGATTTCCATAAACTTCTT--GCTTTAACGATCGCTT---TAAt-ttttttCT 37912 | || || | ||||| | | ||||| ||| || | |||| ||| | ||||| Sbjct 2966275 CTATGATTGCTTTCC--ACAGTTCTTGAGCTCGGAC--TTGCTTAACAAATCTCTTTTCC 2966330 Query 37913 TTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACA-TCGCATAATCCT 37971 | ||| |||| |||||| | || |||| ||| ||| ||| ||| | || Sbjct 2966331 T--CTTCATATTGCCCATATAA-TGCTTCAAATTCTTCTCCCCAACAGTCGGCAAGACCG 2966387 Query 37972 GGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAAT 38031 || || || || ||||||| | ||| |||||||||||| || || | |||||| Sbjct 2966388 GGGCAATCATGAGGGCACATTAAACTCCACATTTCATCTTTTTCAACACGCTTCATAAAC 2966447 Query 38032 AAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACA 38091 ||||| || | |||||||||| ||||| ||| ||| ||| |||||| || || | Sbjct 2966448 AAATCTGGGATCCATAATGCATAAAATAGTTCTCTGGCTCTGACTTCTTCTTTGCCAGTA 2966507 Query 38092 TTCTTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGA 38150 |||||| || || | || ||| || || | ||||| |||||| ||||||| ||||| | Sbjct 2966508 TTCTTT-TTCAGATCTAAAAACTCAAACACATCAGAGTGCCAGGGTTCTAAGTAAATAGC 2966566 Query 38151 CATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATAT 38210 | ||| ||||||| ||| | ||||| || | || ||| || |||| ||||| || | Sbjct 2966567 AAATGCACCTGGTCGTTTGTTGCCTCCTTGGTCAACATACCTTGCTGTATTATTGTACAC 2966626 Query 38211 TCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTT 38270 || ||||| ||||| | |||||| ||| ||||| |||| | |||||||||||| || Sbjct 2966627 TCGCAACATTGGTACAAGACCATTGGATACACCGTTAGTACCTGCTATATAAGTACCTTT 2966686 Query 38271 AGCTCGTATATTACTTATCGAC----AATCCTATTCCACCTGCATGTTTTGATATTAAAG 38326 |||| || ||| || || | ||| || ||||| || |||||| ||||| | Sbjct 2966687 TGCTC---TAATAC-AATGAACATGTAGTCCAATGCCACCAGCTGATTTTGAGATTAATG 2966742 Query 38327 CGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAA 38386 | |||||||||| || ||| |||||||||| || |||||||| || || | || | | Sbjct 2966743 CACATTGTTTTAGTGTGTCATATATACCTTCAATGCTGTCATCTTTCATAGCTATGAGGA 2966802 Query 38387 AACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTA 38446 | ||| ||||| ||| || |||||| | || |||||||| ||| |||||| Sbjct 2966803 AGCAAGAAGACAATTGTGGTCTCGGAGTTGCTGCAGAGAATAATGTGGGACTGGCATGTG 2966862 Query 38447 TGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGT 38506 | || ||||||| ||||| | || || ||||| || | ||| || || | || | Sbjct 2966863 TAAAGTATTTTTCAGACAATAAGTTGTAGGTTTCAATGGCTGAATCAATGTCTTCACCAT 2966922 Query 38507 GAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 | || || | || |||| ||| |||||||| || |||||||| Sbjct 2966923 GGATTCCAATTGAGACCCGCATCAGCATATGCTGGGGTCTTTC 2966965 >seq348 Length=4065129 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/182 (71%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725 || |||||||| || || || ||||||||||| || || || || | ||| ||||| Sbjct 3297619 ATCAGTTCATTGCTGAAGGTCAAACCGGGCATCAAGCCACGCTTCTTCAACCAGAATATT 3297560 Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCT 11785 | ||||| || |||||||| || || || ||||| |||||||| |||| || ||| Sbjct 3297559 GATGCAAAACTTCCGGAAAAGAAGATGCCTTCTACAGCCGCAAATGCAACTATCCTCTCT 3297500 Query 11786 CCA---TATACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACG 11842 ||| | | | | ||||| | ||||||| | ||||| || || || ||||| || Sbjct 3297499 CCAAAGTTTGCTGTCTTGCTGGCGATCCATTGTAATGCCCAGTCTGCCTTTTTTTTCACA 3297440 Query 11843 CA 11844 || Sbjct 3297439 CA 3297438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468502111686560