Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2316 504 9e-138 seq348 111 2e-19 >seq2316 Length=6356476 Score = 504 bits (558), Expect = 9e-138 Identities = 1192/1788 (67%), Gaps = 28/1788 (2%) Strand=Plus/Plus Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889 ||||| | ||||| ||||| | | | || || || |||||| ||| |||||||| Sbjct 2965197 TTGTCAACCGTGAACTGAATAGCATTAGCAGCAGGCTTTATACGTAAATAATACATTCCT 2965256 Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 64949 ||||| | ||| | ||||| ||||||| || || || | ||| |||| |||| Sbjct 2965257 GTTTTCAAACCCATTTTCCATGCGTAAAAGTGAATTGATGTCAATTTTCCATAATTCGGT 2965316 Query 64950 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 65009 || || | ||| || || | |||||||||||| || || || || || | || |||||| Sbjct 2965317 TCAGCCACATGAATGTTAAAAGATTGACTTTGGTCTATAAATGCACCTCGATCAGCAGCC 2965376 Query 65010 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 65068 ||||| || | || || | ||| ||||||| |||||||| || || || ||| || Sbjct 2965377 ATTTTAATTGTAGTTTTAACAGAAATCTCCCAAACTGTTTTATACAATTCTCT-AATGTC 2965435 Query 65069 TTCTGGAAG--GTTTG-TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 65125 | ||| | | | | |||| |||||||| ||| | || ||| ||| || || Sbjct 2965436 CTTTGGTATACGCTCGATATTTTGAATGGAACCATTGTTGTGAATTATCAGATTTTTCAT 2965495 Query 65126 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 65185 || || | |||||| | | || || || ||| | | ||| | ||||| || || Sbjct 2965496 GTCGTCGTCCCATAAATCTGCCTGCGTCAAGTCTCGCAACAAATGATGGTTAACAACCTG 2965555 Query 65186 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTC 65245 ||||| |||||||| || | | |||||| || ||| | ||||| | || || Sbjct 2965556 GAATTCCCCAGACAAAACACGTCTTTGGTAAATGTTTGATGTAAATGGTTCAAAGGATTC 2965615 Query 65246 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATT 65305 ||| |||||||| ||||| || || || || || ||||| || || | || | ||| Sbjct 2965616 ATTGTTTCCCAAGATTTGGGCTGTAGACGCTGTAGGCATTGGAGCTAATAAAAGCGAATT 2965675 Query 65306 TCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 65363 | || || ||||| | ||||| ||||||| | ||| | ||| ||||| || Sbjct 2965676 GCGCAGCCC--ATGTTTGGCAATTTTTTCTTTTAAAACAGACCAGTCCCAGAGATCAGAT 2965733 Query 65364 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATA 65422 || ||| | ||| || | || || | || |||| |||| Sbjct 2965734 GGAGTTTTATCCCACATGTCATATTGCAAAATGCCTTGGCTTGCTGGACT-TCCTTCATA 2965792 Query 65423 TGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATA 65482 |||| || |||||| | | || ||||| ||||| || |||||||| |||||||| Sbjct 2965793 TGTACTATAAACTCCTTCTCTTTGCGCCAGTTCGCAACTGGCTTCTAATGCTCCGTAATA 2965852 Query 65483 AATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATT 65542 || ||||||||||| | | || || | ||| | || ||| | ||| Sbjct 2965853 TATCGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCCTTGTCACTTTCATAAGGAATGCG 2965912 Query 65543 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 65602 | |||| ||| | || ||||| ||||| || ||||| || || ||||| || | | | Sbjct 2965913 CATCAGAACAAATGTATCAGCTAACCCTTGCACTCCAATCCCAATTGGTCTGTGGCGCAT 2965972 Query 65603 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 65662 || || | | |||||||| | || ||| |||||| ||| ||||||||||| || || Sbjct 2965973 GTTGGAATTCTTTGCTTCTGGCACTGGGTAAAAATTAACATCAATAATTTTATTAAGGTT 2966032 Query 65663 TCTGACAATTA-CTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCT--AT 65719 | |||| ||||| || || ||| || ||| | || | |||| || Sbjct 2966033 TTGTGTGATTATCTTTGTG-ACTTCTCTCAACTTTGTAAAGTTGTATGTTTTATCTTCAT 2966091 Query 65720 TA-CAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 65778 || ||||| ||||||| |||| ||| || | ||||||||| || || |||| || | Sbjct 2966092 TAACAAACCTGTTCAAAGCAATAGAAGCTAAATTACAAACAGCAACTTCATCTGCTGAAG 2966151 Query 65779 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 65838 |||| | || || ||||| | |||||| || || ||||| || | ||||| ||||| Sbjct 2966152 TGTATTCAACAATTTCTGTGCACAAATTACTGCATTTAATGGTGCCAAGATTTTTTTGAT 2966211 Query 65839 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 65898 | || ||| ||||||| | ||| ||||| | || |||| || || ||||| | || | Sbjct 2966212 TGCTTTTTCTGTTACAAGAATCTTTATATAACATATATGGTGTGCCTGTTTCCACTTGTG 2966271 Query 65899 ATTCTATAATCGCTTTCCAGACGACTCGAGC-----CTTTATTATAGATTTGTATCTCTT 65953 |||||| || |||||||| | || |||| ||| ||| | ||||||| Sbjct 2966272 CTTCTATGATTGCTTTCCACAGTTCTTGAGCTCGGACTTGCTTAACAA-----ATCTCTT 2966326 Query 65954 TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 66013 ||| ||| ||| | ||| ||| ||| || || ||||||||| | | | | || Sbjct 2966327 TTCCTCTTCATATTGCCCATATAATGCTTCAAATTCTTCTCCCCAACAGTCGGCAAGACC 2966386 Query 66014 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 66073 || || |||| || ||||| || |||| | | || | | || || |||||||| Sbjct 2966387 GGGGCAATCATGAGGGCACATTAAACTCCACATTTCATCTTTTTCAACACGCTTCATAAA 2966446 Query 66074 GAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGT 66133 | ||| || ||||| | || ||||| ||||||| ||| ||| || || || || Sbjct 2966447 CAAATCTGGGATCCATAATGCATAAAATAGTTCTCTGGCTCTGACTTCTTCTTTGCCAGT 2966506 Query 66134 ATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGC 66193 ||||||||| ||||| | ||| | | | |||| | ||||| ||||| ||||| || || Sbjct 2966507 ATTCTTTTTCAGATCTAAAAACTCAAACACATCAGAGTGCCAGGGTTCTAAGTAAATAGC 2966566 Query 66194 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 66253 | | || || |||||||| ||||| || || | || || || || ||||| || || Sbjct 2966567 AAATGCACCTGGTCGTTTGTTGCCTCCTTGGTCAACATACCTTGCTGTATTATTGTACAC 2966626 Query 66254 TCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACT 66313 || ||||||||| | || |||||||||| ||| || || || | ||||| | || | Sbjct 2966627 TCGCAACATTGGTACAAGACCATTGGATACACCGTTAGTACCTGCTATATAAGTACCTTT 2966686 Query 66314 TGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 66373 ||| | |||| | || ||| || || || || || ||| ||||||||||| || Sbjct 2966687 TGCTCTAATACAATGAACATGTAGTCCAATGCCACCAGCTGATTTTGAGATTAATGCACA 2966746 Query 66374 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAAC 66432 | |||||| || ||||| || || || || || ||||| |||| | || | || || | Sbjct 2966747 TTGTTTTAGTGTGTCATATATACCTTCAATGCTGTCATCTTTCATAGCTATG-AGGAAGC 2966805 Query 66433 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 66492 | ||||| ||| | | |||| | ||| ||||| || ||| || || |||| Sbjct 2966806 AAGAAGACAATTGTGGTCTCGGAGTTGCTGCAGAGAATAATGTGGGACTGGCATGTGTAA 2966865 Query 66493 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAA 66552 | |||||||||| | || ||||| || ||||| ||||| || || || ||| | Sbjct 2966866 AGTATTTTTCAGACAATAAGTTGTAGGTTTCAATGGCTGAATCAATGTCTTCACCATGGA 2966925 Query 66553 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 66600 |||| | || ||| ||||| | ||| ||||| ||||||||| | |||| Sbjct 2966926 TTCCAATTGAGACCCGCATCAGCATATGCTGGGGTCTTTCAGCAATCT 2966973 Score = 104 bits (114), Expect = 3e-17 Identities = 125/169 (74%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 66803 AAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGC 66862 |||| |||| || ||||||||||||| ||| |||| |||| |||||| |||| | || Sbjct 2967855 AAAT-GTTTCTTGGTTTCTTTGTGTAAATTAGATATAGCTAATCTAGCAGCTAGTACAGC 2967913 Query 66863 ATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 66922 ||||| ||||| | ||| || |||||| || |||| || || | | |||||||||| Sbjct 2967914 GTAATCTGGATGATCTGTTGTCATAGTGGCAGCAGTTTCTGCAGCTAAATTGTCCAATTC 2967973 Query 66923 TACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATT 66971 || ||||||||||| || || || ||| || |||| || |||| Sbjct 2967974 CACAGTTGTTACTCCCGAGTAAATGCCACTGATGACTTTCAAAGTTATT 2968022 >seq348 Length=4065129 Score = 111 bits (122), Expect = 2e-19 Identities = 144/197 (73%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 36408 TTTCATTACTATCTTTAACATATGTATCAATCA--AAAGACTATACATTTCCGAATGAAT 36465 |||| ||| ||| | | ||| ||||| |||| || || |||||| || || || | Sbjct 3297255 TTTCTTTAGGGTCTCTGATATAAGTATCTATCAGCAATGA--ATACATCTCAGAGTGTAC 3297198 Query 36466 GTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGT 36525 || || || || ||||| |||||||| || | || || || ||| || |||||| Sbjct 3297197 ATTCTCCATAGCAATTTGGAATCCGTAAAAGAACCTTGCTTCACCAATTTGAACTTCTTG 3297138 Query 36526 ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 36585 ||||||| ||| | | ||||||||| || || || || ||| |||||||||||||| Sbjct 3297137 TGAAAATCGCTCTACCAGATTTTCATTAACAATACCATCGGAGGCAGCAAAAAACGCCAA 3297078 Query 36586 TACATGTTTTATAAAAT 36602 |||||||||||||||| Sbjct 3297077 GACATGTTTTATAAAAT 3297061 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 36644 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 36703 || |||| ||| ||||| ||||||||||| ||||| || ||||||||||| ||||| | | Sbjct 3296936 TTGGATAGATCAACTTCCTCCACTGTCCAGAATGAAGCTTCTGCCTTTTTGTACATTTGC 3296877 Query 36704 CAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 ||||| ||| ||||||| || || || || || || Sbjct 3296876 CAGATATCAGGATATTGGATGGGGAAGATGACGAA 3296842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658140927982160