Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq3650 239 4e-58 seq593 140 3e-28 seq2316 134 1e-26 seq1964 89.7 5e-13 >seq3650 Length=1334389 Score = 239 bits (264), Expect = 4e-58 Identities = 677/1015 (67%), Gaps = 34/1015 (3%) Strand=Plus/Plus Query 20341 TAATCGACCACACCGTCTTCCCAAGTGCCGGCGACGGGACCGGTGGCCGTGCCCGCGAAA 20400 || || || |||||||||| |||||| || ||| || || || || |||| | ||| Sbjct 960558 TAGTCAACTACACCGTCTTGCCAAGTACCTTTGACTGGTCCAGTCGCGTTGCCAGTGAAT 960617 Query 20401 GGATTATCACTATCGCTCTTC---ACACCGGTCCAACCGCGCCCGTACATTGCTACACCC 20457 ||||| | ||| || ||||| ||||| ||||| |||||||| ||||| ||| Sbjct 960618 GGATTGTTGTCTTCGTAATTATGAACACCAGTCCAGCCGCGTCCGTACATAGCTACGCCC 960677 Query 20458 AGTGCAATTTTACTTTTTGGT-ACGTGTTGCGCGAGCAACGCTTCTACGGCACGATCTGC 20516 | |||| || ||| | | ||| ||| || ||||| || || || || | Sbjct 960678 ACCACAATCTT-CTTAGGGTTCACGCCTTGAGCAAGCAAATATTTCACACCAAAGTCAGT 960736 Query 20517 GCAATAAGGTTCGTCGGGTTTCCAGGCGGGTGCAAACAATGCGGTTTGATGTCCCAGATC 20576 | ||||| ||| | || ||||| |||||||| | | || || ||||| || || Sbjct 960737 GGTATAAGTTTCCTTAGGGTTCCAAGCGGGTGCGTAAAGTGGAGTCTGATGACCGAGGGT 960796 Query 20577 CGTAGTG-GACCAGGCTCCTTTGAAATCGTACGACATTAAGAA--TATGGTATCGAGGTA 20633 || || |||||||| ||||| ||||| || ||| | ||| |||||| | | || Sbjct 960797 -GTCGTTAGACCAGGCGCCTTTAAAATCATAACTCATAAGGAAGATATGGT--CCATATA 960853 Query 20634 TTTTTGCGCTTCGGTGTAATCGACCACAGCAATCTTATCGTCGCCCGCGCTTATCGCGCT 20693 ||||| ||||| |||||||||| || |||||||| || || || || ||| Sbjct 960854 CTTTTGAGCTTCACTGTAATCGACAACTTGGATCTTATCCCATCCAGCACTGATAGCGGA 960913 Query 20694 CGTCAACAGATAGTAACGATTGT-GATGTATGCCGA--GGGCGTCGAGCATGCCGCGAAG 20750 |||| | | ||| || | | | | | || || ||| | ||| | || | Sbjct 960914 GGTCAGC---TCGTATTTCTTACCGGTCTCTTCAGAAAGGTCGTTCAACATTTCACGCAA 960970 Query 20751 TTCACGCAGCAGG--ATCGTGTACGTGGCTCGATCGCGTTCGGCGTCGCCGACATTGGGG 20808 ||| || | | ||| || | ||| || ||||| | |||| | |||| Sbjct 960971 TTCCTTCATTAATTCAACGTAAACAT--CTCCGTCT--TTCGGGCTA-CCGAGGTCGGGG 961025 Query 20809 TTCGCGCCATTGCCGCCCGGAAACTCCCAATCAATGTCGACGCCATCAAAGAATTTCCAC 20868 || || || || || || || || |||||||| ||||| || ||||| ||||| ||||| Sbjct 961026 TTAGCTCCCTTACCTCCAGGGAATTCCCAATCGATGTCAACACCATCGAAGAACTTCCAG 961085 Query 20869 GTTTCTAGATACTCTTGGACCGAATCGATAAACGTTTGGCGCACGATCTTGTCG-TGCAT 20927 || || | |||| || ||||| | || | | | ||||||| || | Sbjct 961086 GTCAAGAGGAAATCTTTTACAGAATCAACGAAGCGATCTCTCTTCTCCTTGTCGGTGAAG 961145 Query 20928 ATGGAAAAATGGGTCCGAAAGTGTCCAGCCCCCGATAGACGGTAACACTTTGAGATGCGG 20987 | | || || || || | |||||||| || ||||| || |||| | || || | || Sbjct 961146 AAG-AAGAAGGGATCGGCTAGTGTCCAACCACCGATGGAAGGTAGGATCTTAAGTTCAGG 961204 Query 20988 GTTCGCCAATTTCGCGGCCATAAGTTGGCCAAAGTTGCCTTTGTACGGTTCGTTCCATGC 21047 | || ||| | ||| || |||||||||||||||||||| ||||||||||| Sbjct 961205 CCTGGCTTGTTTGAGAGACATCAGCTGGCCAAAGTTGCCTTTGTAAGGTTCGTTCCA--G 961262 Query 21048 GCTGACA--CCTTTCTGGGGTTTCTGTATGGCCGCCCACGGATCGTGAATGGCCACCTTA 21105 | |||| || ||||| |||||||| | || ||||| ||||||||||| | || || Sbjct 961263 GAAGACAATCCCTTCTGTGGTTTCTGAAGAGCGGCCCAAGGATCGTGAATAGATACTTTG 961322 Query 21106 AAGTCGGCACGGCCCGCGCACGAACGTTGCAACGCTTCGAAACTGCCCGGGA-CACTTTT 21164 || || | ||||| |||||| | || | |||| ||||||||| || | ||||| Sbjct 961323 AAATCTTCTCGGCCGCTGCACGATCTCTGAAGAGCTTGGAAACTGCCTTCGATCTCTTTT 961382 Query 21165 GAGCGCATCGTTGATGCCTTCGCCTCCGCACATGGGCACGAAACCGTACAACAAATGCGA 21224 ||| ||||||||||| || || ||||| || || | ||| ||||| | ||||| | Sbjct 961383 AAGC-TGTCGTTGATGCCATCTCCACCGCAAATTGGAATGAAGCCGTATAGTAAATGAGT 961441 Query 21225 CAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGGCGCGGATACACACCCCATTCGAC 21284 || ||| || | || || |||||| || || | | ||| |||||||||||||| || Sbjct 961442 CAGGTTAGGAATTGGAACACGATCGACTGGGAATTTTCTCGGGTACACACCCCATTCTAC 961501 Query 21285 AAAGTATGCTCCAATGATCTTGTCC-GAGCGCTTTTCGAAACGTTTATTGTTTTC 21338 ||||||||||||| | ||| ||| || || || ||| |||| || ||||| Sbjct 961502 GAAGTATGCTCCAA-CAACTTTTCCAGAAGTCTGTTTGAATAGTTTGTTCTTTTC 961555 >seq593 Length=2014934 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| |||||| | ||| ||||||| ||| || || |||||||| || || || Sbjct 755144 GCCTCCTCTTAAACGAAGAACCAAGTGAAGCGTCGATTCCTTTTGAATATTGTAGTCTGA 755203 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||||| ||||||||||| ||||| ||| |||| |||||||||||||| || || Sbjct 755204 AAGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGG 755263 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 ||||| || ||||| ||| |||| | ||||| | || | |||||| | ||||||| Sbjct 755264 AATGCCCTCCTTGTC-TTGAATTTTCGCTTTTACATTCTCAATTGTGTCTGATGGCTCCA 755322 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | ||||| || || | |||||| || || || ||||| Sbjct 755323 CCTCCAGTGTGATAGTCTTTCCTGTTAGCGTTTTAACAAAAATCTGCAT 755371 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | |||||||||| ||||| ||||| || ||||| ||||| | Sbjct 755373 CCTCCTCTAAGACGGAGCACTAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAATCTGAC 755432 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||||| || | ||||| |||||||| |||||| |||||| | ||||| || || || Sbjct 755433 AATGTGCGTCCA-TCTTCAAGCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGGGG 755491 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| |||||| || | | ||| | |||||| | ||||| || Sbjct 755492 AATGCCTTCTTTGTCTTGGATTTTAGCCTTAACATTTTCAATTGTGTCAGATGGCTCAAC 755551 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | || | |||||||| ||||| || || ||||| || |||||| Sbjct 755552 CTCTAATGTGATAGTCTTGCCTGTCAAGGTCTTAACGAAGATCTGCATA 755600 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||||| || | || || || ||||| |||||||| ||| | Sbjct 755601 CCACCACGGAGACGGAGTACTAAATGCAGGGTGGATTCCTTTTGGATGTTATAGTCGGAC 755660 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||||| || | ||||| | ||||||||| || |||| ||||| ||||| || || || Sbjct 755661 AATGTGCGTCCA-TCTTCCAACTGTTTACCGGCGAAGATGAGACGCTGCTGGTCTGGGGG 755719 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| ||| || | | || | |||||| | |||||||| Sbjct 755720 AATGCCCTCCTTGTCTTGGATCTTTGCCTTAACATTCTCAATTGTGTCTGAAGGCTCCAC 755779 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | |||||||| ||||| || || || || || ||||| Sbjct 755780 CTCCAAGGTGATGGTCTTGCCTGTCAATGTCTTCACAAAAATCTGCAT 755827 >seq2316 Length=6356476 Score = 134 bits (148), Expect = 1e-26 Identities = 484/746 (65%), Gaps = 17/746 (2%) Strand=Plus/Plus Query 153070 GGTTGACAACTTGAAATTCGCCCGACAATACACGTCTCAAAAACAAATTAC-TGTGAAAC 153128 |||| ||||| || ||||| || ||||| |||||||| | | || ||| ||| Sbjct 2965543 GGTTAACAACCTGGAATTCCCCAGACAAAACACGTCTTTGGTAAATGTTTGATGT-AAAT 2965601 Query 153129 GGTTCAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCC 153188 |||||||| || || ||||| | ||||| || || | || || ||||| || Sbjct 2965602 GGTTCAAAGGATTCATTGTTTCCCAAGATTTGGGCTGTAGACGCTGTAGGCATTGGAGCT 2965661 Query 153189 ACAAGCAACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGTGACCAGTCC 153248 | | | |||||| || | || ||||| || || || || ||||||||| Sbjct 2965662 AATAAAAGCGAATTGCGCAGCCCATGTTTGGCAATTTTTTCTTTTAAAACAGACCAGTCC 2965721 Query 153249 CATAACGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTTG 153308 || | || || | || ||||| || |||||||| || |||||||| ||| Sbjct 2965722 CAGAGATCAGATGGAGTTTTATCCCACATGTCATATTGCAAAATGCCTTGGCTTGCTGGA 2965781 Query 153309 CTACCGGCAAACGTGCTATACGGCTCACTGTCAGA-CGCCAGTTTCAAACTGGCATCGAG 153367 || || || | || ||||| ||| | || |||||||| ||||||| || | Sbjct 2965782 CTTCCTTCATATGTACTATAAA-CTCCTTCTCTTTGCGCCAGTTCGCAACTGGCTTCTAA 2965840 Query 153368 CGCGGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCATCGCTCAC 153427 || | | ||| | |||||| | || |||| ||| ||| || || || || | Sbjct 2965841 TGCTCCGTAATATATCGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCCTTGTCACTTTC 2965900 Query 153428 GTACGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATGGG 153487 || || ||||||| || ||||||| ||| || || ||||| | ||||| || || || Sbjct 2965901 ATAAGGAATGCGCATCAGAACAAATGTATCAGCTAACCCTTGCACTCCAATCCCAATTGG 2965960 Query 153488 ACGATGGCGCATATTAGAtttttttGCAGCTTCAACAGGATAGAAATTGCGGTCGATAAT 153547 | |||||||| || || || ||||| || || || || ||||| || ||||| Sbjct 2965961 TCTGTGGCGCATGTTGGAATTCTTTGCTTCTGGCACTGGGTAAAAATTAACATCAATAAT 2966020 Query 153548 TTTATTTAAACTAATCACGA-CATGTTT----CACCACAGAA---TGCAACAGTTGAAAA 153599 |||||| | | || || ||| | | | || || || ||||| | Sbjct 2966021 TTTATTAAGGTTTTGTGTGATTATCTTTGTGACTTCTCTCAACTTTGTAA-AGTTGTATG 2966079 Query 153600 TCAAACGTTCCATTAATGATATATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCA 153659 | | || ||||| | | | |||| | ||||| || || || || ||||| ||| Sbjct 2966080 TTTTATCTT-CATTA---ACAAACCTGTTCAAAGCAATAGAAGCTAAATTACAAACAGCA 2966135 Query 153660 GTTTCGTCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGG 153719 ||| || | | |||| || ||||| | |||||||| |||||||| || | Sbjct 2966136 ACTTCATCTGCTGAAGTGTATTCAACAATTTCTGTGCACAAATTACTGCATTTAATGGTG 2966195 Query 153720 CCGCAATTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTG 153779 || ||| ||||||||||||| | |||||||| || || |||| ||| ||||||||| Sbjct 2966196 CCAAGATTTTTTTGATTGCTTTTTCTGTTACAAGAATCTTTATATAACATATATGGTGTG 2966255 Query 153780 CCGGTTTCGGCTTGAATTTCTATAAT 153805 || ||||| |||| |||||| || Sbjct 2966256 CCTGTTTCCACTTGTGCTTCTATGAT 2966281 Score = 102 bits (112), Expect = 8e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | | ||| || ||||||| || || || || || ||||| || ||| | Sbjct 2659571 CCTCCTCGCAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGAC 2659512 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||| | || | ||||| | |||||| || || |||||| | ||||||||| || || Sbjct 2659511 AATGTACGTCCA-TCTTCTAACTGTTTGCCGGCGAAGATCAACCTTTGCTGATCTGGGGG 2659453 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 ||||| |||||||| ||| |||| | ||||| | ||| | ||||| | || || | Sbjct 2659452 AATGCCCTCTTTGTCT-TGAATTTTCGCTTTTACATTTTCAATAGTGTCAGAGGCTTCAA 2659394 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | || || || || | ||||||||||| || ||||| Sbjct 2659393 CCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCAT 2659345 >seq1964 Length=1360 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | || || |||| |||||||| || || ||||| || ||| Sbjct 275 GCCGCCGCGGAGACGAAGCACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 216 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||| | || || | ||| || || ||| |||| ||||||||||| || ||||| Sbjct 215 GAGTGTACGACCATCCTCCAACTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGAGG 156 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | || | ||||| | ||| || || Sbjct 155 GATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGTTCAAC 96 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | || ||||| |||| || || ||||| || |||||| Sbjct 95 TTCTAGGGTGATTGTTTTGCCAGTCAGAGTCTTGACGAAGATCTGCATA 47 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496039978100800