Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2316 567 1e-156 seq348 123 4e-23 seq2205 114 2e-20 >seq2316 Length=6356476 Score = 567 bits (628), Expect = 1e-156 Identities = 1211/1789 (68%), Gaps = 30/1789 (2%) Strand=Plus/Plus Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768 ||||| | ||||| ||||| | | | || || || |||||| ||| |||||||| Sbjct 2965197 TTGTCAACCGTGAACTGAATAGCATTAGCAGCAGGCTTTATACGTAAATAATACATTCCT 2965256 Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828 ||||| | ||| | ||||| |||| || || || || | ||| |||| |||| Sbjct 2965257 GTTTTCAAACCCATTTTCCATGCGTAAAAGTGAATTGATGTCAATTTTCCATAATTCGGT 2965316 Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888 || || | ||| || || | |||||||||||| || || || || || | || |||||| Sbjct 2965317 TCAGCCACATGAATGTTAAAAGATTGACTTTGGTCTATAAATGCACCTCGATCAGCAGCC 2965376 Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 78947 ||||| || | || || | ||| ||||||| |||||||| || || || ||| || Sbjct 2965377 ATTTTAATTGTAGTTTTAACAGAAATCTCCCAAACTGTTTTATACAATTCTCT-AATGTC 2965435 Query 78948 TTCTGGAAG--GTTTG-TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 79004 | ||| | | | | |||| |||||||| ||| | || ||| ||| || || Sbjct 2965436 CTTTGGTATACGCTCGATATTTTGAATGGAACCATTGTTGTGAATTATCAGATTTTTCAT 2965495 Query 79005 CTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 79064 || || | |||||| | | || || || ||| | | ||| | ||||| || || Sbjct 2965496 GTCGTCGTCCCATAAATCTGCCTGCGTCAAGTCTCGCAACAAATGATGGTTAACAACCTG 2965555 Query 79065 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTC 79124 ||||| |||||||| || | | |||||| || ||| ||||||| | ||||| Sbjct 2965556 GAATTCCCCAGACAAAACACGTCTTTGGTAAATGTTTGATGTAAATGGTTCAAAGGATTC 2965615 Query 79125 ATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATT 79184 ||| |||||||| ||||| || || || || || ||||| || || | || | ||| Sbjct 2965616 ATTGTTTCCCAAGATTTGGGCTGTAGACGCTGTAGGCATTGGAGCTAATAAAAGCGAATT 2965675 Query 79185 TCTAAGACCGTATGATCTG--ATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGAC 79242 | || || ||| | | ||||| ||||||| | ||| ||||| |||||||| Sbjct 2965676 GCGCAGCCC--ATGTTTGGCAATTTTTTCTTTTAAAACAGACCAGTCCCAGAGATCAGAT 2965733 Query 79243 GGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTAT 79302 || || ||| | |||||||| | ||| || | || || |||| ||| Sbjct 2965734 GGAGTTTTATCCCACATGTCATATTGCAAAATGCCTTGGCTTGCTGGACTTCCTTCATAT 2965793 Query 79303 GTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAA 79362 || |||| |||||| ||| || | ||| ||||| || ||||||||||||||||| Sbjct 2965794 GTACTATAAACTCCTTCTCTTTGCGCCAGTTCGCAACTGGCTTCTAATGCTCCGTAATAT 2965853 Query 79363 ATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTT 79422 || |||||||| || | | || || | ||| | || ||| | ||| Sbjct 2965854 ATCGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCCTTGTCACTTTCATAAGGAATGCGC 2965913 Query 79423 AAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 79482 | |||| ||| | || ||||| ||||| || ||||| || || ||||| || | | | Sbjct 2965914 ATCAGAACAAATGTATCAGCTAACCCTTGCACTCCAATCCCAATTGGTCTGTGGCGCATG 2965973 Query 79483 TTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTC 79542 || ||| | | |||||||| | || ||| |||||| ||| ||||||||||| || || Sbjct 2965974 TTGGAATTCTTTGCTTCTGGCACTGGGTAAAAATTAACATCAATAATTTTATTAAGGTTT 2966033 Query 79543 CTGACT-ATTA-CTTTGACCACATC-CTTTAGTTTGAGAAAATCAAATCGTCCATCT--A 79597 || | |||| ||||| || || || | |||| ||| | || | |||| | Sbjct 2966034 -TGTGTGATTATCTTTGTG-ACTTCTCTCAACTTTGT-AAAGTTGTATGTTTTATCTTCA 2966090 Query 79598 TTA-CAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 79656 ||| ||||| ||||||| || | ||| || | ||||||||| || || |||| || Sbjct 2966091 TTAACAAACCTGTTCAAAGCAATAGAAGCTAAATTACAAACAGCAACTTCATCTGCTGAA 2966150 Query 79657 GCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGA 79716 | |||| | ||||| ||||| | ||||| || |||||||| || | ||||| |||| Sbjct 2966151 GTGTATTCAACAATTTCTGTGCACAAATTACTGCATTTAATGGTGCCAAGATTTTTTTGA 2966210 Query 79717 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGA 79776 || || ||| ||||||| | ||| ||||| | || | || || || ||||| | || Sbjct 2966211 TTGCTTTTTCTGTTACAAGAATCTTTATATAACATATATGGTGTGCCTGTTTCCACTTGT 2966270 Query 79777 GATTCTATAATCGCTTTCCAGACGACTCGAGC-----CTTTATTATAGACTTGTATCTCT 79831 | |||||| || |||||||| | || |||| ||| ||| | |||||| Sbjct 2966271 GCTTCTATGATTGCTTTCCACAGTTCTTGAGCTCGGACTTGCTTAACAA-----ATCTCT 2966325 Query 79832 TTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATC 79891 |||| ||| ||||| ||||||| ||| || || ||||||||| ||| | | | Sbjct 2966326 TTTCCTCTTCATATTGCCCATATAATGCTTCAAATTCTTCTCCCCAACAGTCGGCAAGAC 2966385 Query 79892 CAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAA 79951 | || || || | ||| ||||| || |||| | |||| | | || || ||||||| Sbjct 2966386 CGGGGCAATCATGAGGGCACATTAAACTCCACATTTCATCTTTTTCAACACGCTTCATAA 2966445 Query 79952 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTG 80011 | | ||| || ||||| | || |||||| ||||||| ||| || || || || | Sbjct 2966446 ACAAATCTGGGATCCATAATGCATAAAATAGTTCTCTGGCTCTGACTTCTTCTTTGCCAG 2966505 Query 80012 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 80071 |||||||||| ||||| | ||| | | | |||||| ||||| ||||| ||||| || | Sbjct 2966506 TATTCTTTTTCAGATCTAAAAACTCAAACACATCAGAGTGCCAGGGTTCTAAGTAAATAG 2966565 Query 80072 CCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 80131 | | | || ||||||||||| ||||| || || | || || || || ||||| || | Sbjct 2966566 CAAATGCACCTGGTCGTTTGTTGCCTCCTTGGTCAACATACCTTGCTGTATTATTGTACA 2966625 Query 80132 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCAC 80191 ||| ||||||||| | || |||||||||| ||| || || || | ||||| | || Sbjct 2966626 CTCGCAACATTGGTACAAGACCATTGGATACACCGTTAGTACCTGCTATATAAGTACCTT 2966685 Query 80192 TGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 80251 | || | |||| | || ||| || || || || || ||| ||||||||||| | Sbjct 2966686 TTGCTCTAATACAATGAACATGTAGTCCAATGCCACCAGCTGATTTTGAGATTAATGCAC 2966745 Query 80252 ATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCAT-GTTAAGTAGAAAA 80310 || |||||| || ||||| || || || ||||| ||||| |||| | || | || || Sbjct 2966746 ATTGTTTTAGTGTGTCATATATACCTTCAATGCTGTCATCTTTCATAGCTATG-AGGAAG 2966804 Query 80311 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 80370 || ||||| ||| | | |||| | ||| ||||| || ||| || || ||| Sbjct 2966805 CAAGAAGACAATTGTGGTCTCGGAGTTGCTGCAGAGAATAATGTGGGACTGGCATGTGTA 2966864 Query 80371 AACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGA 80430 || |||||||||||| || ||||| || ||||| ||||| || || || ||| Sbjct 2966865 AAGTATTTTTCAGACAATAAGTTGTAGGTTTCAATGGCTGAATCAATGTCTTCACCATGG 2966924 Query 80431 ATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 80479 ||||| | | ||| ||||| | ||| ||||| ||||||||| | |||| Sbjct 2966925 ATTCCAATTGAGACCCGCATCAGCATATGCTGGGGTCTTTCAGCAATCT 2966973 Score = 98.7 bits (108), Expect = 1e-15 Identities = 124/169 (73%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 80682 AAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGC 80741 |||| |||| || ||||| ||||||| ||| |||| |||| ||| || |||| | || Sbjct 2967855 AAAT-GTTTCTTGGTTTCTTTGTGTAAATTAGATATAGCTAATCTAGCAGCTAGTACAGC 2967913 Query 80742 ATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 80801 ||||||||||| | ||| || |||||| || |||| || || | | |||||||||| Sbjct 2967914 GTAATCTGGATGATCTGTTGTCATAGTGGCAGCAGTTTCTGCAGCTAAATTGTCCAATTC 2967973 Query 80802 TACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATT 80850 || ||||||||||| || || || ||| || |||| || |||| Sbjct 2967974 CACAGTTGTTACTCCCGAGTAAATGCCACTGATGACTTTCAAAGTTATT 2968022 >seq348 Length=4065129 Score = 123 bits (136), Expect = 4e-23 Identities = 162/222 (73%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| || ||| ||| ||||| ||| || || | |||||||| | ||||||||| | Sbjct 3297633 CCTCATCCCTAGAAATCAGTTCATTGCTGAAGGTCAAACCGGGCATCAAGCCACGCTTCT 3297574 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||| ||||| || ||||| || ||||||||||| |||||||| || ||||| | Sbjct 3297573 TCAACCAGAATATTGATGCAAAACTTCCGGAAAAGAAGATGCCTTCTACAGCCGCAAATG 3297514 Query 50102 CAACAAGTCTCTCTCCATAACTGGCGCTGTCATG-----TATCCACTTTTGAGCCCAATC 50156 |||| | ||||||||| || | |||||| || ||||| | | ||||| || Sbjct 3297513 CAACTATCCTCTCTCCA-AAGT-TTGCTGTCTTGCTGGCGATCCATTGTAATGCCCAGTC 3297456 Query 50157 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198 ||||| ||||| |||||||| | || || |||||||| || Sbjct 3297455 TGCCTTTTTTTTCACACAAGGTAAAGTCTCAATGGCATTGAA 3297414 Score = 109 bits (120), Expect = 8e-19 Identities = 144/198 (73%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 50210 TTTCATTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAAT 50267 |||| ||| ||| | | ||||||||| |||| || || |||||| || || || | Sbjct 3297255 TTTCTTTAGGGTCTCTGATATAAGTATCTATCAGCAATGA--ATACATCTCAGAGTGTAC 3297198 Query 50268 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGT 50327 || || || || || || |||||||| || | || || || ||| || |||||| Sbjct 3297197 ATTCTCCATAGCAATTTGGAATCCGTAAAAGAACCTTGCTTCACCAATTTGAACTTCTTG 3297138 Query 50328 ACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 50387 ||||||| || | | ||||||||| || || || || ||| |||||||||||||| Sbjct 3297137 TGAAAATCGCTCTACCAGATTTTCATTAACAATACCATCGGAGGCAGCAAAAAACGCCAA 3297078 Query 50388 TACATGTTTTATAAAATG 50405 ||||||||||||||||| Sbjct 3297077 GACATGTTTTATAAAATG 3297060 Score = 100 bits (110), Expect = 4e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 50446 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 50505 || |||| ||| ||||| ||||||||||| ||||| || ||||||||||| ||||| | | Sbjct 3296936 TTGGATAGATCAACTTCCTCCACTGTCCAGAATGAAGCTTCTGCCTTTTTGTACATTTGC 3296877 Query 50506 CAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 ||||| ||| |||||||||| ||||| || || || Sbjct 3296876 CAGATATCAGGATATTGGATGGGGAAGATGACGAA 3296842 >seq2205 Length=3731788 Score = 114 bits (126), Expect = 2e-20 Identities = 216/317 (68%), Gaps = 3/317 (1%) Strand=Plus/Minus Query 173691 TTATGACTCCAATTAATCCCATGTTAGCAGAATCATGTGATTCTGTCAATAAGGCGTTTA 173750 ||||||| || || || |||||||| ||| ||||| | ||| | | | ||| | | Sbjct 1151104 TTATGACACCTGTTTTGCCTATGTTAGCTGAAGCATGTAAATCTATAGAAATGGCTATGA 1151045 Query 173751 AAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGTTC 173810 | |||| |||| |||||||| ||||| | ||||| |||||||||||||| ||||||| Sbjct 1151044 AGAAATGTCCAAACGGAATGTTCTCGGAAATAAAATATGATGGTGAAAGAGTTCAAGTTC 1150985 Query 173811 ATAAAAATAATAACGAGTTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCTCATA 173870 ||||||| | || ||| | ||| | || | || | ||| | | |||| Sbjct 1150984 ATAAAAAAGGTTCTGAATTTAAATATTTTTCTCGAGCTCTTAAGGCTGTAATGGCACATA 1150925 Query 173871 AAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCATAT 173930 |||| || || | |||||||| | ||||| |||||| |||| ||| | | || Sbjct 1150924 AAGTAAATCATTTAAAAGAATATTTGCCGAAGGCATTTCCTAAAGGTACCGATTTGGTAC 1150865 Query 173931 TGGATTCTGAAATTGTTCTTGTAGACGAACATAATG---TACCGCTACCGTTTGGAAGTT 173987 | ||| | |||||| | || || || | | | || ||| |||| ||||| | | Sbjct 1150864 TAGATGCAGAAATTTTACTGGTTGATGTGAAAACTGGGAAACCTTTACCATTTGGTACAT 1150805 Query 173988 TAGGTATACACAAAAAG 174004 |||||||||||||| || Sbjct 1150804 TAGGTATACACAAACAG 1150788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718234017833360