Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq348 111 2e-19 >seq348 Length=4065129 Score = 111 bits (122), Expect = 2e-19 Identities = 181/254 (71%), Gaps = 9/254 (4%) Strand=Plus/Minus Query 14112 AATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14171 ||||| || |||| ||||||| | || || ||||| || || || |||||| Sbjct 3297267 AATAATAATACCTT-TCTTTAGGGTCTCTGATATAAGTATCTATCAGCAATGAATACATC 3297209 Query 14172 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCA- 14230 |||||||||| || |||||||| || || || || |||||| | || ||||| |||| Sbjct 3297208 TCAGAGTGTACATTCTCCATAGCAATTTGGAATCCGTAAAAGAACCTTGCTTC--ACCAA 3297151 Query 14231 -TTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14289 ||| ||||| |||||| || ||| |||||||||||| |||||||| || | Sbjct 3297150 TTTGAACTTCTTGTGAAAATCGCTCTACCAGATTTTCATTAACAATACCATCGGAGGCAG 3297091 Query 14290 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCT-TCA-TTGTTGAGTTTTTTCCA 14347 ||||||| ||||| | | ||| ||||| || |||| || | || | ||| ||| Sbjct 3297090 CAAAAAACGCCAAGACATGTTTTATAAA--ATGCCTCTCACAGTCCTTTAAACTTTCCCA 3297033 Query 14348 ATCGGATAAATCCT 14361 ||| |||||||||| Sbjct 3297032 ATCTGATAAATCCT 3297019 Score = 100 bits (110), Expect = 3e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||| ||| ||| ||||| || || || || || |||||||| || || || | Sbjct 3297633 CCTCATCCCTAGAAATCAGTTCATTGCTGAAGGTCAAACCGGGCATCAAGCCACGCTTCT 3297574 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | ||||| ||||||| ||||| ||||||||||| || || || || || ||||| | Sbjct 3297573 TCAACCAGAATATTGATGCAAAACTTCCGGAAAAGAAGATGCCTTCTACAGCCGCAAATG 3297514 Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14073 | | || | |||||||| |||| | ||| | | ||||||| | ||||| || | Sbjct 3297513 CAACTATCCTCTCTCCAAAGTTTGCTGTCTTGCTGGCGATCCATTGTAATGCCCAGTCTG 3297454 Query 14074 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14116 |||||||| | | || | || ||||| ||||| || || Sbjct 3297453 CCTTTTTTTTCACACAAGGTAAAGTCTCAATGGCATTGAACAA 3297411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479704769171600