Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq348 100 3e-16 >seq348 Length=4065129 Score = 100 bits (110), Expect = 3e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 ||||||| ||| ||| ||||| || || || || || |||||||| || || || | Sbjct 3297633 CCTCATCCCTAGAAATCAGTTCATTGCTGAAGGTCAAACCGGGCATCAAGCCACGCTTCT 3297574 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | ||||| ||||||| || || |||||||||||| || || || || || ||||| | Sbjct 3297573 TCAACCAGAATATTGATGCAAAACTTCCGGAAAAGAAGATGCCTTCTACAGCCGCAAATG 3297514 Query 13802 CTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAG 13861 | | || | |||||||| |||| | ||| | | ||||||| | ||||| || | Sbjct 3297513 CAACTATCCTCTCTCCAAAGTTTGCTGTCTTGCTGGCGATCCATTGTAATGCCCAGTCTG 3297454 Query 13862 AtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAA 13904 |||||||| | | || | || || || |||||||| || Sbjct 3297453 CCTTTTTTTTCACACAAGGTAAAGTCTCAATGGCATTGAACAA 3297411 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/224 (71%), Gaps = 8/224 (4%) Strand=Plus/Minus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 || || ||||| || || || |||||| |||||||||| || || ||||| || || Sbjct 3297238 ATATAAGTATCTATCAGCAATGAATACATCTCAGAGTGTACATTCTCCATAGCAATTTGG 3297179 Query 13990 AAACCATAAAAACATCTAGCTTCTGACCATTGT-ACCTCCGAGT-AAAATCTTTCTGCCA 14047 || || ||||| | || ||||| |||| | | | || | || |||||| ||| ||| Sbjct 3297178 AATCCGTAAAAGAACCTTGCTTC--ACCAATTTGAACTTCTTGTGAAAATCGCTCTACCA 3297121 Query 14048 AGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGT 14107 |||||||||||||||||||| || |||||||| ||||| | | ||| ||||| Sbjct 3297120 GATTTTCATTAACAATACCATCGGAGGCAGCAAAAAACGCCAAGACATGTTTTATAAA-- 3297063 Query 14108 ATTGCTCT-TCA-TTGTTGAGTTTTTTCCAATCGGCTAAATCCT 14149 || |||| || | || | ||| |||||| | |||||||| Sbjct 3297062 ATGCCTCTCACAGTCCTTTAAACTTTCCCAATCTGATAAATCCT 3297019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478565624337360