Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq2316 109 4e-19 seq593 89.7 4e-13 >seq2316 Length=6356476 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| ||||| || |||||||| || | || ||||| || | ||||| |||||| Sbjct 2659571 CCTCCTCGCAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGAC 2659512 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||||||| | || || || ||||||||||| || ||||| | || ||||| | || Sbjct 2659511 AATGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAACCTTTGCTGATCTGGGGGA 2659452 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || ||||| || || | |||| || | ||| ||||| || || || Sbjct 2659451 ATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCAATAGTGTCAGAGGCTTCAACC 2659392 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||| |||||| ||||| || || || ||||| || || || |||||| Sbjct 2659391 TCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCATT 2659344 >seq593 Length=2014934 Score = 89.7 bits (98), Expect = 4e-13 Identities = 169/249 (68%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | || ||||| | ||| |||||||| | || || |||||| Sbjct 755601 CCACCACGGAGACGGAGTACTAAATGCAGGGTGGATTCCTTTTGGATGTTATAGTCGGAC 755660 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||| ||| | || ||||| ||||| ||||| || || | ||||| || || | || Sbjct 755661 AATGTGCGTCCATCTTCCAACTGTTTACCGGCGAAGATGAGACGCTGCTGGTCTGGGGGA 755720 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | || || | ||| |||||| || ||| || Sbjct 755721 ATGCCCTCCTTGTCTTGGATCTTTGCCTTAACATTCTCAATTGTGTCTGAAGGCTCCACC 755780 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTTAATTTTA 43122 || | || || || || || || | || ||||||||||| ||||| || ||||| | | Sbjct 755781 TCCAAGGTGATGGTCTTGCCTGTCAATGTCTTCACAAAAATCTGCATCTTGTTAATGTAA 755840 Query 43123 TTTGTACAC 43131 | |||| || Sbjct 755841 TCTGTAAAC 755849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381351593872692