Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2316 536 2e-147 seq348 123 3e-23 seq2205 120 4e-22 >seq2316 Length=6356476 Score = 536 bits (594), Expect = 2e-147 Identities = 1199/1785 (67%), Gaps = 22/1785 (1%) Strand=Plus/Plus Query 70792 TTGTCCAATGTAAACTGAATGGGAGAGGATGC-GGCTTTCGTACGTAGATAGTACATGCC 70850 ||||| | || |||||||| | | | || |||||| |||||| ||| ||||| || Sbjct 2965197 TTGTCAACCGTGAACTGAATAGCATTAGCAGCAGGCTTTA-TACGTAAATAATACATTCC 2965255 Query 70851 TGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGG 70910 |||||| | ||| | ||||| ||||||| || || || | ||| ||| | || Sbjct 2965256 TGTTTTCAAACCCATTTTCCATGCGTAAAAGTGAATTGATGTCAATTTTCCATAATTCGG 2965315 Query 70911 ATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 70970 || || | ||||| || | || |||||||| || || || || || | || ||||| Sbjct 2965316 TTCAGCCACATGAATGTTAAAAGATTGACTTTGGTCTATAAATGCACCTCGATCAGCAGC 2965375 Query 70971 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATAT 71029 |||||| || | || || | ||| ||||||| |||||||| || || || ||| | Sbjct 2965376 CATTTTAATTGTAGTTTTAACAGAAATCTCCCAAACTGTTTTATACAATTCTCT-AATGT 2965434 Query 71030 CTTCTGGAAG--GTTTG-TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGA 71086 | | ||| | | | | |||| |||||||| ||| | ||| ||| |||||| | Sbjct 2965435 CCTTTGGTATACGCTCGATATTTTGAATGGAACCATTGTTGTGAATTATCAGATTTTTCA 2965494 Query 71087 TCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTT 71146 | || || | |||||| | | || || || ||| | | |||| | ||||| || | Sbjct 2965495 TGTCGTCGTCCCATAAATCTGCCTGCGTCAAGTCTCGCAACAAATGATGGTTAACAACCT 2965554 Query 71147 GAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACT 71206 | ||||| |||||||| || | | |||||| || ||| | ||||| | || | Sbjct 2965555 GGAATTCCCCAGACAAAACACGTCTTTGGTAAATGTTTGATGTAAATGGTTCAAAGGATT 2965614 Query 71207 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTAT 71266 |||| |||||||| ||||| || || || || || ||||| || || | || || || Sbjct 2965615 CATTGTTTCCCAAGATTTGGGCTGTAGACGCTGTAGGCATTGGAGCTAATAAAAGCGAAT 2965674 Query 71267 TTCTAAGACCATGTGATCGG--ATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGA 71324 | | || |||||| | || ||||| ||||||| | ||| | ||| ||||| || Sbjct 2965675 TGCGCAGCCCATGT--TTGGCAATTTTTTCTTTTAAAACAGACCAGTCCCAGAGATCAGA 2965732 Query 71325 TGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATA 71384 ||| ||||| | || || |||| |||| Sbjct 2965733 TGGAGTTTTATCCCACATGTCATATTGCAAAATGCCTTGGCTTGCTGGACTTCCTTCATA 2965792 Query 71385 TGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATA 71444 |||| || ||||||| ||| || ||||| ||||| || ||||||||||| ||||| Sbjct 2965793 TGTACTATAAACTCCTTCTCTTTGCGCCAGTTCGCAACTGGCTTCTAATGCTCCGTAATA 2965852 Query 71445 AATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATT 71504 || |||||||| || | | || || | ||| | || ||| | ||| Sbjct 2965853 TATCGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCCTTGTCACTTTCATAAGGAATGCG 2965912 Query 71505 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTT 71564 | |||| ||| | || ||||| ||||| || ||||| || || |||||||| | | | Sbjct 2965913 CATCAGAACAAATGTATCAGCTAACCCTTGCACTCCAATCCCAATTGGTCTGTGGCGCAT 2965972 Query 71565 ATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 71624 || ||| | | |||||||| | || ||| |||||| ||| ||||||||||| || || Sbjct 2965973 GTTGGAATTCTTTGCTTCTGGCACTGGGTAAAAATTAACATCAATAATTTTATTAAGGTT 2966032 Query 71625 TCTGACT-ATTA-CTTTGACCACATC-CTTTAGTTTGAGAAAATCAAATCTCCCATCT-- 71679 | || | |||| ||||| || || || | |||| ||| | || | |||| Sbjct 2966033 T-TGTGTGATTATCTTTGTG-ACTTCTCTCAACTTTGT-AAAGTTGTATGTTTTATCTTC 2966089 Query 71680 ATTA-CAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATC 71738 |||| ||||| |||||| |||| ||| || | ||||||||| || || |||| || Sbjct 2966090 ATTAACAAACCTGTTCAAAGCAATAGAAGCTAAATTACAAACAGCAACTTCATCTGCTGA 2966149 Query 71739 GGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTG 71798 | |||| | |||||| ||||| | |||||| || || ||||| || | ||||| ||| Sbjct 2966150 AGTGTATTCAACAATTTCTGTGCACAAATTACTGCATTTAATGGTGCCAAGATTTTTTTG 2966209 Query 71799 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTG 71858 ||| || ||| ||||||| | ||| ||||| | ||| | || || || ||||| | || Sbjct 2966210 ATTGCTTTTTCTGTTACAAGAATCTTTATATAACATATATGGTGTGCCTGTTTCCACTTG 2966269 Query 71859 AGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTC 71918 | |||||| || |||||||| | || |||| | | || |||||||||| Sbjct 2966270 TGCTTCTATGATTGCTTTCCACAGTTCTTGAGCTCGGACTTGCTTAACAAATCTCTTTTC 2966329 Query 71919 TCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGG 71978 ||| ||||| ||||||| ||| || || ||||||||| | | | | || || Sbjct 2966330 CTCTTCATATTGCCCATATAATGCTTCAAATTCTTCTCCCCAACAGTCGGCAAGACCGGG 2966389 Query 71979 ACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAG 72038 || |||| || ||||| || |||| | |||| | | || || |||||||| | Sbjct 2966390 GCAATCATGAGGGCACATTAAACTCCACATTTCATCTTTTTCAACACGCTTCATAAACAA 2966449 Query 72039 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATT 72098 ||| || ||||| | || |||||| ||||||| ||| || || || || ||||| Sbjct 2966450 ATCTGGGATCCATAATGCATAAAATAGTTCTCTGGCTCTGACTTCTTCTTTGCCAGTATT 2966509 Query 72099 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 72158 |||||| ||||| | ||| | | | |||||| ||||| ||||| ||||| || || | Sbjct 2966510 CTTTTTCAGATCTAAAAACTCAAACACATCAGAGTGCCAGGGTTCTAAGTAAATAGCAAA 2966569 Query 72159 AACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 72218 | || || |||||||| ||||| || || | || || || || ||||| || |||| Sbjct 2966570 TGCACCTGGTCGTTTGTTGCCTCCTTGGTCAACATACCTTGCTGTATTATTGTACACTCG 2966629 Query 72219 CAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGC 72278 ||||||||| | || |||||||||| |||| || || || | ||||| | || | || Sbjct 2966630 CAACATTGGTACAAGACCATTGGATACACCGTTAGTACCTGCTATATAAGTACCTTTTGC 2966689 Query 72279 ACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 72338 | |||| || ||| || || || || || ||| ||||||||||| ||| | Sbjct 2966690 TCTAATACAATGAACATGTAGTCCAATGCCACCAGCTGATTTTGAGATTAATGCACATTG 2966749 Query 72339 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGC 72397 ||||| || ||||| || || || || || ||||| |||| | || | || || || Sbjct 2966750 TTTTAGTGTGTCATATATACCTTCAATGCTGTCATCTTTCATAGCTATG-AGGAAGCAAG 2966808 Query 72398 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 72457 ||||| ||| | | |||| | ||| ||||| || ||| || || ||||| Sbjct 2966809 AAGACAATTGTGGTCTCGGAGTTGCTGCAGAGAATAATGTGGGACTGGCATGTGTAAAGT 2966868 Query 72458 ATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTC 72517 |||||||||||| || ||||| || ||||| ||||| || || || ||| |||| Sbjct 2966869 ATTTTTCAGACAATAAGTTGTAGGTTTCAATGGCTGAATCAATGTCTTCACCATGGATTC 2966928 Query 72518 CTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCT 72562 | | | ||| ||||| | ||||||||| ||||||||| | |||| Sbjct 2966929 CAATTGAGACCCGCATCAGCATATGCTGGGGTCTTTCAGCAATCT 2966973 Score = 107 bits (118), Expect = 3e-18 Identities = 126/169 (75%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 72765 AAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGC 72824 |||| |||| || ||||| ||||||| ||| |||| |||| ||| || ||||| | || Sbjct 2967855 AAAT-GTTTCTTGGTTTCTTTGTGTAAATTAGATATAGCTAATCTAGCAGCTAGTACAGC 2967913 Query 72825 ATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTC 72884 ||||||||||| | ||| || |||||| || ||||||| || | | |||||||||| Sbjct 2967914 GTAATCTGGATGATCTGTTGTCATAGTGGCAGCAGTTTCTGCAGCTAAATTGTCCAATTC 2967973 Query 72885 TACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATT 72933 || ||||||||||| || || || ||| || |||| || |||| Sbjct 2967974 CACAGTTGTTACTCCCGAGTAAATGCCACTGATGACTTTCAAAGTTATT 2968022 >seq348 Length=4065129 Score = 123 bits (136), Expect = 3e-23 Identities = 161/222 (73%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||| ||| ||| | ||| ||| || || | |||||||| | ||||||||| | Sbjct 3297633 CCTCATCCCTAGAAATCAGTTCATTGCTGAAGGTCAAACCGGGCATCAAGCCACGCTTCT 3297574 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | ||| ||||| || ||||| ||| ||||||||||| |||||||| |||||||| | Sbjct 3297573 TCAACCAGAATATTGATGCAAAACTTCCGGAAAAGAAGATGCCTTCTACAGCCGCAAATG 3297514 Query 42207 CAATAAGTCTCTCTCCATAACCGGCACTGTCATG-----TATCCACTTTTGAGCCCAATC 42261 ||| | ||||||||| | | ||||| || ||||| | | ||||| || Sbjct 3297513 CAACTATCCTCTCTCCAAAGTTTG--CTGTCTTGCTGGCGATCCATTGTAATGCCCAGTC 3297456 Query 42262 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 ||||| ||||| |||||||| | || || |||||||| || Sbjct 3297455 TGCCTTTTTTTTCACACAAGGTAAAGTCTCAATGGCATTGAA 3297414 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 42551 TTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTC 42610 || |||| ||| ||||| || || ||||| ||||| |||||||||||||| ||||| | | Sbjct 3296936 TTGGATAGATCAACTTCCTCCACTGTCCAGAATGAAGCTTCTGCCTTTTTGTACATTTGC 3296877 Query 42611 CAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 ||||||||| ||||||| || ||||| || || || Sbjct 3296876 CAGATATCAGGATATTGGATGGGGAAGATGACGAA 3296842 Score = 93.3 bits (102), Expect = 6e-14 Identities = 140/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 42315 TTTCATTACTATCTTTAACATATGTATCGATCA--AAAGACTATACATTTCTGAATGAAT 42372 |||| ||| ||| | | ||| ||||| |||| || || |||||| || || || | Sbjct 3297255 TTTCTTTAGGGTCTCTGATATAAGTATCTATCAGCAATGA--ATACATCTCAGAGTGTAC 3297198 Query 42373 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGT 42432 || || || || || || |||||||| || | || || || || || |||||| Sbjct 3297197 ATTCTCCATAGCAATTTGGAATCCGTAAAAGAACCTTGCTTCACCAATTTGAACTTCTTG 3297138 Query 42433 ACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 42492 ||||||| || | | |||||| || || || || || ||| |||||||||||||| Sbjct 3297137 TGAAAATCGCTCTACCAGATTTTCATTAACAATACCATCGGAGGCAGCAAAAAACGCCAA 3297078 Query 42493 TACATGTTTTATAAAAT 42509 |||||||||||||||| Sbjct 3297077 GACATGTTTTATAAAAT 3297061 >seq2205 Length=3731788 Score = 120 bits (132), Expect = 4e-22 Identities = 217/317 (68%), Gaps = 3/317 (1%) Strand=Plus/Minus Query 165040 TTATGACTCCAATTAATCCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCGTTTA 165099 ||||||| || || || |||||||| ||| | ||| | ||| | | | ||| | | Sbjct 1151104 TTATGACACCTGTTTTGCCTATGTTAGCTGAAGCATGTAAATCTATAGAAATGGCTATGA 1151045 Query 165100 AAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGTTC 165159 | |||| |||| |||||||| ||||| | ||||| |||||||||||||| ||||||| Sbjct 1151044 AGAAATGTCCAAACGGAATGTTCTCGGAAATAAAATATGATGGTGAAAGAGTTCAAGTTC 1150985 Query 165160 ATaaaaaaaaTAACGAGTTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCTCATA 165219 |||||||| | || ||| | ||| | || | || | ||| | | |||| Sbjct 1150984 ATAAAAAAGGTTCTGAATTTAAATATTTTTCTCGAGCTCTTAAGGCTGTAATGGCACATA 1150925 Query 165220 AAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGTAT 165279 |||| || || | |||||||| | ||||| |||||| |||| ||| | | ||| Sbjct 1150924 AAGTAAATCATTTAAAAGAATATTTGCCGAAGGCATTTCCTAAAGGTACCGATTTGGTAC 1150865 Query 165280 TGGATTCTGAAATTGTTCTTGTAGACGAACATAATG---TACCGCTACCGTTTGGAAGTT 165336 | ||| | |||||| | || || || | | | || ||| |||| ||||| | | Sbjct 1150864 TAGATGCAGAAATTTTACTGGTTGATGTGAAAACTGGGAAACCTTTACCATTTGGTACAT 1150805 Query 165337 TAGGTATACACAAAAAG 165353 |||||||||||||| || Sbjct 1150804 TAGGTATACACAAACAG 1150788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671106700084240