Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq3650 241 1e-58 seq2316 143 3e-29 seq593 122 9e-23 seq1964 89.7 5e-13 >seq3650 Length=1334389 Score = 241 bits (266), Expect = 1e-58 Identities = 675/1013 (67%), Gaps = 30/1013 (3%) Strand=Plus/Plus Query 18946 TAATCGACCACACCGTTTTCCCAAGTGCCGGCGACGGGACCGGTGGCCGTGCCCGCAAAT 19005 || || || ||||||| || |||||| || ||| || || || || |||| | ||| Sbjct 960558 TAGTCAACTACACCGTCTTGCCAAGTACCTTTGACTGGTCCAGTCGCGTTGCCAGTGAAT 960617 Query 19006 GGATTATCACTATCGCTCTTT---ACCCCAGTCCAACCGCGCCCGTACATTGCTACACCC 19062 ||||| | ||| || || |||||||| ||||| |||||||| ||||| ||| Sbjct 960618 GGATTGTTGTCTTCGTAATTATGAACACCAGTCCAGCCGCGTCCGTACATAGCTACGCCC 960677 Query 19063 AGTGCAATTTTGCTTGTCGGT-ACGTGTTGCGCAAGCAACGCCTCTACGGCACGATCCGC 19121 | |||| || ||| | | ||| ||| |||||||| | || || || | Sbjct 960678 ACCACAATCTT-CTTAGGGTTCACGCCTTGAGCAAGCAAATATTTCACACCAAAGTCAGT 960736 Query 19122 GCAATAAGGTTCGTCGGGTTTCCATGCAGGTGCAAACAAAGCGGTTTGATGTCCTAAATC 19181 | ||||| ||| | || ||||| || ||||| | | | || ||||| || | Sbjct 960737 GGTATAAGTTTCCTTAGGGTTCCAAGCGGGTGCGTAAAGTGGAGTCTGATGACCGAGGGT 960796 Query 19182 CGTCAT-AGACCAGGCTCCTTTAAAATCGTACGACATTA--AAAATATGGTGTCGAGGTA 19238 ||| | ||||||||| ||||||||||| || ||| | || ||||||| | | || Sbjct 960797 -GTCGTTAGACCAGGCGCCTTTAAAATCATAACTCATAAGGAAGATATGGT--CCATATA 960853 Query 19239 TTTTTGCGCTTCAGTGTAATAGACCACAGCAATCTTATCGTCGCCCGCGCTTATCGCACT 19298 ||||| |||||| |||||| ||| || |||||||| || || || || || Sbjct 960854 CTTTTGAGCTTCACTGTAATCGACAACTTGGATCTTATCCCATCCAGCACTGATAGCGGA 960913 Query 19299 CGTCAACAGATAGTAACGATTGTGATGTACGCCTAGGGCGTCGAGCATGCCGCGAAGTTC 19358 |||| | || | | | | | | ||| ||| | ||| | || | ||| Sbjct 960914 GGTCAGCTCGTATTTCTTACCGGTCTCTTCAGAAAGGTCGTTCAACATTTCACGCAATTC 960973 Query 19359 ACGCAGCAGG--ATCGTGTACGTGGCCCGATCGCGTTCGGCGTCGCCGACGTTGGGGTTC 19416 || | | ||| || | || | ||||| | |||| || |||||| Sbjct 960974 CTTCATTAATTCAACGTAAACATCTCCGTCT----TTCGGGCTA-CCGAGGTCGGGGTTA 961028 Query 19417 GCGCCATTGCCGCCTGGAAACTCCCAATCGATATCGACGCCATCGAAGAATTTCCACGTT 19476 || || || || || || || ||||||||||| || || ||||||||||| ||||| || Sbjct 961029 GCTCCCTTACCTCCAGGGAATTCCCAATCGATGTCAACACCATCGAAGAACTTCCAGGTC 961088 Query 19477 TCTAGATACTCTTGGACCGAATCGATAAA-CG-TCTGCCGTACGCTCTTGTCG-TGCATA 19533 || | |||| || ||||| | || || ||| | | | | ||||||| || | | Sbjct 961089 AAGAGGAAATCTTTTACAGAATCAACGAAGCGATCTCTCTT-CTC-CTTGTCGGTGAAGA 961146 Query 19534 TGGTAAAATGGGTCCGAAAGTGTCCAGCCCCCGATCGAAGGTAGCACTTTTAGATGAGGG 19593 | | || || || | |||||||| || ||||| |||||||| | || || | ||| Sbjct 961147 AGA-AGAAGGGATCGGCTAGTGTCCAACCACCGATGGAAGGTAGGATCTTAAGTTCAGGC 961205 Query 19594 TTCGCCAATTTGGCTGCCATAAGTTGGCCAAAGTTGCCTTTGTACGGTTCGTTCCATGCG 19653 | || |||| | ||| || |||||||||||||||||||| ||||||||||| | Sbjct 961206 CTGGCTTGTTTGAGAGACATCAGCTGGCCAAAGTTGCCTTTGTAAGGTTCGTTCCA--GG 961263 Query 19654 CTGACA--CCTTTTTGGGGTTTCTGTATGGCCGCCCAAGGATCGTGAATGGCCACTTTGA 19711 |||| || || || |||||||| | || ||||||||||||||||| | ||||||| Sbjct 961264 AAGACAATCCCTTCTGTGGTTTCTGAAGAGCGGCCCAAGGATCGTGAATAGATACTTTGA 961323 Query 19712 AGTCGGCACGACCGGCACACGAACGTTGCAACGCTTCGAAACTGCCCGGGACAGTTTTGA 19771 | || | || ||| ||||| | || | |||| ||||||||| || ||| | Sbjct 961324 AATCTTCTCGGCCGCTGCACGATCTCTGAAGAGCTTGGAAACTGCCTTCGATCTCTTTTA 961383 Query 19772 GGGCATCATTGATGCCGTCGCCACCGCACATGGGCACGAAACCGTACAACAAATGCGACA 19831 | || |||||||| || |||||||| || || | ||| ||||| | ||||| | || Sbjct 961384 AGCTGTCGTTGATGCCATCTCCACCGCAAATTGGAATGAAGCCGTATAGTAAATGAGTCA 961443 Query 19832 AGTTCGGTGTGGGCACTTTATCGACGGGAAACTGTCGCGGATACACACCCCATTCGACAA 19891 ||| || | || || |||||| || || | || ||| |||||||||||||| || | Sbjct 961444 GGTTAGGAATTGGAACACGATCGACTGGGAATTTTCTCGGGTACACACCCCATTCTACGA 961503 Query 19892 AGTATGCACCTATGATCTTGTCC-GAGCGCTTTTCGAACCGTTTATTGTTTTC 19943 ||||||| || | | ||| ||| || || || ||| |||| || ||||| Sbjct 961504 AGTATGCTCC-AACAACTTTTCCAGAAGTCTGTTTGAATAGTTTGTTCTTTTC 961555 >seq2316 Length=6356476 Score = 143 bits (158), Expect = 3e-29 Identities = 484/746 (65%), Gaps = 17/746 (2%) Strand=Plus/Plus Query 156492 GGTTGACAACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATTAC-TGTGAAAC 156550 |||| ||||| || ||||| || |||||||||||||| | | || ||| ||| Sbjct 2965543 GGTTAACAACCTGGAATTCCCCAGACAAAACACGTCTTTGGTAAATGTTTGATGT-AAAT 2965601 Query 156551 GGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCC 156610 |||||||| || || ||||| | ||||| || || | || || ||||| || Sbjct 2965602 GGTTCAAAGGATTCATTGTTTCCCAAGATTTGGGCTGTAGACGCTGTAGGCATTGGAGCT 2965661 Query 156611 ACAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGTCC 156670 | | | ||||| || | || | ||| || ||| ||| || ||||||||| Sbjct 2965662 AATAAAAGCGAATTGCGCAGCCCATGTTTGGCAATTTTTTCTTTTAAAACAGACCAGTCC 2965721 Query 156671 CATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTG 156730 || | || || ||| ||||| || |||||||| || |||| ||| ||| Sbjct 2965722 CAGAGATCAGATGGAGTTTTATCCCACATGTCATATTGCAAAATGCCTTGGCTTGCTGGA 2965781 Query 156731 CTACCGGCAAACGTGCTATAAGGCTCACTAACAGAT-GCCAGTTCGTAACTGGCCTCGAG 156789 || || || | || |||||| ||| | | ||||||||| ||||||| || | Sbjct 2965782 CTTCCTTCATATGTACTATAAA-CTCCTTCTCTTTGCGCCAGTTCGCAACTGGCTTCTAA 2965840 Query 156790 CGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCAC 156849 || | | ||| | ||||| ||||||| || | | || || || || | Sbjct 2965841 TGCTCCGTAATATATCGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCCTTGTCACTTTC 2965900 Query 156850 GTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGG 156909 || || ||||||| || |||||||| ||| || || ||||| | ||||| || || || Sbjct 2965901 ATAAGGAATGCGCATCAGAACAAATGTATCAGCTAACCCTTGCACTCCAATCCCAATTGG 2965960 Query 156910 ACGATGGCGCATATTAGAtttttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAAT 156969 | |||||||| || || || ||||| | | ||||| ||||| ||||||||| Sbjct 2965961 TCTGTGGCGCATGTTGGAATTCTTTGCTTCTGGCACTGGGTAAAAATTAACATCAATAAT 2966020 Query 156970 TTTATTCAAACTAT---CCACTACATGTTTGACCAC-----AGTGTGCAATAGTTGAAAA 157021 |||||| | | | | || | | |||| | | | || || ||||| | Sbjct 2966021 TTTATTAAGGTTTTGTGTGATTATCTTTGTGACTTCTCTCAACTTTGTAA-AGTTGTATG 2966079 Query 157022 TCAAAAGTATCATTATTGATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCA 157081 | |||| | ||| | | | | || | ||||| || |||| |||||| || ||| Sbjct 2966080 T----TTTATCTTCATTAACAAACCTGTTCAAAGCAATAGAAGCTAAATTACAAACAGCA 2966135 Query 157082 GTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAAT 157141 ||| || | | |||| || ||||| | |||||||| |||||||| || Sbjct 2966136 ACTTCATCTGCTGAAGTGTATTCAACAATTTCTGTGCACAAATTACTGCATTTAATGGTG 2966195 Query 157142 CCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTG 157201 || ||| ||||||||||||| | ||| |||| || || |||||||| || |||||| Sbjct 2966196 CCAAGATTTTTTTGATTGCTTTTTCTGTTACAAGAATCTTTATATAACATATATGGTGTG 2966255 Query 157202 CCGGTTTCGGCTTGAATTTCTATGAT 157227 || ||||| |||| ||||||||| Sbjct 2966256 CCTGTTTCCACTTGTGCTTCTATGAT 2966281 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | | ||| || || |||| ||| ||||| || || |||||||| ||| | Sbjct 2659571 CCTCCTCGCAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGAC 2659512 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||| | || | ||||| | ||||| || || |||||| | ||||||||| || || Sbjct 2659511 AATGTACGTCCA-TCTTCTAACTGTTTGCCGGCGAAGATCAACCTTTGCTGATCTGGGGG 2659453 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| |||||||| |||||| ||||| | ||| | ||||| | || ||| || Sbjct 2659452 AATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCAATAGTGTCAGAGGCTTCAAC 2659393 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || || | ||||||||||| || ||||| Sbjct 2659392 CTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCAT 2659345 >seq593 Length=2014934 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | ||| | ||||| |||| ||||||||||| || ||||||||||| | Sbjct 755373 CCTCCTCTAAGACGGAGCACTAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAATCTGAC 755432 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||||| || | ||||| || ||||| |||||| |||||| | ||||| || || || Sbjct 755433 AATGTGCGTCCA-TCTTCAAGCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGGGG 755491 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||||||||| ||||| || | | ||| | ||||| | || || || Sbjct 755492 AATGCCTTCTTTGTCTTGGATTTTAGCCTTAACATTTTCAATTGTGTCAGATGGCTCAAC 755551 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | |||||||| ||||| || || ||||| || |||||| Sbjct 755552 CTCTAATGTGATAGTCTTGCCTGTCAAGGTCTTAACGAAGATCTGCATA 755600 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||||| |||||| | ||| || |||| || ||||| ||||| || ||||| || Sbjct 755144 GCCTCCTCTTAAACGAAGAACCAAGTGAAGCGTCGATTCCTTTTGAATATTGTAGTCTGA 755203 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||||| |||||||| || ||||| ||| |||| |||||||||||||| || || Sbjct 755204 AAGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGG 755263 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| || ||||| |||||| ||||| | || | ||||| | || || || Sbjct 755264 AATGCCCTCCTTGTCTTGAATTTTCGCTTTTACATTCTCAATTGTGTCTGATGGCTCCAC 755323 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || || | ||||| || || || ||||| Sbjct 755324 CTCCAGTGTGATAGTCTTTCCTGTTAGCGTTTTAACAAAAATCTGCAT 755371 >seq1964 Length=1360 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | || ||||||| ||||| || || || |||||||| ||| Sbjct 275 GCCGCCGCGGAGACGAAGCACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 216 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||| | || || | || || || ||| |||| ||||||||||| || ||||| Sbjct 215 GAGTGTACGACCATCCTCCAACTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGAGG 156 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| || || || | | || | ||||||| |||||| || Sbjct 155 GATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGTTCAAC 96 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| | || | || ||||| |||| || || ||||| || |||||| Sbjct 95 TTCTAGGGTGATTGTTTTGCCAGTCAGAGTCTTGACGAAGATCTGCATA 47 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506989847827680